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Journal of Microbiological Methods
Article . 2014 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Loop-mediated isothermal amplification of vanA gene enables a rapid and naked-eye detection of vancomycin-resistant enterococci infection

Authors: Hye Jin, Kim; Yu Jin, Kim; Dong Eun, Yong; Kyungwon, Lee; Jeon Han, Park; Jae Myun, Lee; Sang Sun, Yoon;

Loop-mediated isothermal amplification of vanA gene enables a rapid and naked-eye detection of vancomycin-resistant enterococci infection

Abstract

Vancomycin-resistant enterococci (VRE) are one of the leading causes of nosocomial infection at intensive care unit (ICU). A rapid and sensitive detection of VRE infection is in high demand for timely and suitable antibiotic treatment. Here, we optimized a distinct DNA-based diagnostic technique, loop-mediated isothermal amplification (LAMP) for a rapid detection of the presence of vanA gene, a critical component of the gene cluster required for vancomycin resistance. Amplification efficiency was optimal at 62°C and with 2mM MgSO4. The detection limit of the DNA template was 80pg and LAMP amplicons were detected within 40min; thereby suggesting a potential applicability of LAMP as a sensitive and urgent diagnostic method. Furthermore, positive LAMP reaction was directly detected with the naked-eye by monitoring the formation of a white precipitate or the color change induced by hydroxy naphthol blue (HNB) dye. Finally, 56 clinical isolates were successfully tested for the presence of vanA gene by LAMP, which was determined to be more sensitive than PCR. Together, our results clearly demonstrate the usefulness of LAMP for the diagnosis of VRE infection.

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Keywords

Feces/microbiology, 570, Loop-mediated isothermal amplification (LAMP), Carbon-Oxygen Ligases/genetics*, 610, Cross Infection/microbiology*, Vancomycin-resistant enterococci (VRE), Vancomycin-Resistant Enterococci, Feces, Bacterial Proteins, Diagnosis, Humans, Bacterial Proteins/genetics*, Vancomycin-Resistant Enterococci/enzymology*, Carbon-Oxygen Ligases, Gram-Positive Bacterial Infections, Cross Infection, Vancomycin-Resistant Enterococci/isolation & purification*, Gram-Positive Bacterial Infections/microbiology*, Nucleic Acid Amplification Techniques/methods*, Vancomycin-Resistant Enterococci/genetics, Nucleic Acid Amplification Techniques

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Top 10%
Top 10%
Top 10%
Green