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Cancer Research, Statistics, and Treatment
Article . 2024 . Peer-reviewed
Data sources: Crossref
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A narrative review with a step-by-step guide to R software for clinicians: Navigating medical data analysis in cancer research

Authors: Madhura A Gandhi; Srikanth P Tripathy; Sujata S Pawale; Jitendra S Bhawalkar;

A narrative review with a step-by-step guide to R software for clinicians: Navigating medical data analysis in cancer research

Abstract

Cancer causes immense suffering globally, and data constitute the cornerstone of cancer research. Analyzing data is pivotal, but manual analysis of vast datasets within constrained time frames is challenging and error-prone. Even minor inaccuracies can lead to false interpretations, affecting lives. This review explores the free, open-source, and widely acclaimed R software. Our goal was to facilitate data analysis and visualization in the scientific writing of clinical projects. R offers a wide range of features and packages for tasks like data manipulation, cleaning, analysis, and creating informative graphs, including traditional statistics, hypothesis testing, regression, time series, survival analysis, machine learning, and medical image analysis. These capabilities aid in accurate data analysis, facilitating a deeper understanding of cancer mechanisms and predicting outcomes. To prepare this review, we performed an online literature search in Scopus, PubMed, and Google for articles and books related to R software published between March 2012 and January 2024, using specific keywords such as “medical data analysis,” “RStudio,” “statistical software,” “clinical data management,” “R programming,” and “research tools.” Articles, books, and online sources lacking full-text options in English or complete information were excluded. A total of 66 articles and book chapters were retrieved, 22 were excluded, and 44 were included in this review. Through this article, our goal was to provide a user-friendly guide to employing R software for fundamental analysis with dummy data, making it accessible even to non-programmers. This will empower individuals to perform statistical analyses independently, contributing to cancer research with flexibility and accuracy.

Keywords

data analysis, scientific writing, biostatistics, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, medical research, rstudio, statistics, program, RC254-282

  • BIP!
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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
gold