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https://doi.org/10.1038/s41598...
Article . 2023 . Peer-reviewed
License: CC BY
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PubMed Central
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https://doaj.org/article/8e8fa...
Article . 2023
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Histone H3-wild type diffuse midline gliomas with H3K27me3 loss are a distinct entity with exclusive EGFR or ACVR1 mutation and differential methylation of homeobox genes

Authors: Ajuyah, P; Mayoh, C; Lau, LMS; Barahona, P; Wong, M; Chambers, H; Valdes-Mora, F; +15 Authors

Histone H3-wild type diffuse midline gliomas with H3K27me3 loss are a distinct entity with exclusive EGFR or ACVR1 mutation and differential methylation of homeobox genes

Abstract

AbstractDiffuse midline gliomas (DMG) harbouring H3K27M mutation are paediatric tumours with a dismal outcome. Recently, a new subtype of midline gliomas has been described with similar features to DMG, including loss of H3K27 trimethylation, but lacking the canonical H3K27M mutation (H3-WT). Here, we report a cohort of five H3-WT tumours profiled by whole-genome sequencing, RNA sequencing and DNA methylation profiling and combine their analysis with previously published cases. We show that these tumours have recurrent and mutually exclusive mutations in either ACVR1 or EGFR and are characterised by high expression of EZHIP associated to its promoter hypomethylation. Affected patients share a similar poor prognosis as patients with H3K27M DMG. Global molecular analysis of H3-WT and H3K27M DMG reveal distinct transcriptome and methylome profiles including differential methylation of homeobox genes involved in development and cellular differentiation. Patients have distinct clinical features, with a trend demonstrating ACVR1 mutations occurring in H3-WT tumours at an older age. This in-depth exploration of H3-WT tumours further characterises this novel DMG, H3K27-altered sub-group, characterised by a specific immunohistochemistry profile with H3K27me3 loss, wild-type H3K27M and positive EZHIP. It also gives new insights into the possible mechanism and pathway regulation in these tumours, potentially opening new therapeutic avenues for these tumours which have no known effective treatment. This study has been retrospectively registered on clinicaltrial.gov on 8 November 2017 under the registration number NCT03336931 (https://clinicaltrials.gov/ct2/show/NCT03336931).

Keywords

Activin Receptors, Science, Type I, 610, 32 Biomedical and Clinical Sciences, Methylation, 3105 Genetics, Article, Histones, 3102 Bioinformatics and Computational Biology, Cancer Genomics, Rare Diseases, anzsrc-for: 32 Biomedical and Clinical Sciences, Genetics, 2.1 Biological and endogenous factors, Homeobox, Humans, anzsrc-for: 31 Biological Sciences, Child, Cancer, anzsrc-for: 3211 Oncology and Carcinogenesis, Human Genome, Q, R, Genes, Homeobox, 600, Glioma, 3211 Oncology and Carcinogenesis, Brain Disorders, Brain Cancer, ErbB Receptors, anzsrc-for: 3105 Genetics, Genes, Mutation, Medicine, anzsrc-for: 3102 Bioinformatics and Computational Biology, Activin Receptors, Type I, 31 Biological Sciences, 4.2 Evaluation of markers and technologies

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Top 10%
Average
Top 10%
Green
hybrid
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