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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Journal of Algorithm...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Journal of Algorithms
Article . 2004 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Faster algorithms for string matching with k mismatches

Faster algorithms for string matching with \(k\) mismatches
Authors: Amir, Amihood; Lewenstein, Moshe; Porat, Ely;

Faster algorithms for string matching with k mismatches

Abstract

Summary: The string matching with mismatches problem is that of finding the number of mismatches between a pattern \(P\) of length \(m\) and every length \(m\) substring of the text \(T\). Currently, the fastest algorithms for this problem are the following. The Galil-Giancarlo algorithm finds all locations where the pattern has at most \(k\) errors (where \(k \) is part of the input) in time \(O(nk)\). The Abrahamson algorithm finds the number of mismatches at every location in time \(O(\sqrt{m\log m})\). We present an algorithm that is faster than both. Our algorithm finds all locations where the pattern has at most \(k\) errors in time \(O(\sqrt{k\log k})\). We also show an algorithm that solves the above problem in time \(O((n+(nk^3)/m)\log k)\).

Related Organizations
Keywords

Combinatorics on words, Approximate string matching, Hamming distance, Combinatorial algorithms on words, Analysis of algorithms, Nonnumerical algorithms, Design and analysis of algorithms

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
93
Top 10%
Top 1%
Top 10%
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