
pmid: 27228666
Aim. Confirmation of taxonomic position of Lactobacillus fermentum 90 TC-4 strain using phenotypic (classic microbiological, MALDI TOF mass-spectrometry) and genetic (16S rRNA gene segment sequencing and full genome sequencing) methods. Materials and methods. Object of the study - Lactobacillus fermentum 90 TC-4 strains from various collections. Mass-spectrometric analysis was carried out using Autoflex MALDI TOF mass-spectrometer (Bruker Daltonics, Germany), study of biochemical properties of the strain was carried out using API 50 CHL strips (Biomerueux, France), “DNA-sorb B” kit was used for isolation ofgenome DNA (CRIE, Moscow). Sequencing of the accumulated fragments of 16S rRNA gene was carried out using GenomeLab GeXP sequencing (Beckman Coulter, USA), full genome sequencing was carried out in MiSeq platform (Illumina). Assembly ofgenome and bioinformation analysis was carried out using BLAST program (www.blast.ncbi.nlm.nih.gov/blast.cgi), «CLC Bio Assembly» and genome server RAST (rast.nmpdr.org). Results. L. fermentum 90 TC-4 strain was established to be contaminated by L. plantarum culture in a series of cases. As a result of identification of a pure culture of L. fermentum 90 TC-4 strain using a specter of high-technology methods, membership of the strain in L. fermentum species has been proven. Conclusion. Taxonomic status of L. fermentum 90 TC-4 strain was confirmed.
Limosilactobacillus fermentum, lactobacillus fermentum, Base Sequence, Probiotics, High-Throughput Nucleotide Sequencing, maldi tof масс-спектрометрия, Microbiology, QR1-502, lactobacilli probiotic strains, maldi tof mass-spectrometry, RNA, Ribosomal, 16S, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, full genome sequencing, Humans, Genome, Bacterial, Phylogeny
Limosilactobacillus fermentum, lactobacillus fermentum, Base Sequence, Probiotics, High-Throughput Nucleotide Sequencing, maldi tof масс-спектрометрия, Microbiology, QR1-502, lactobacilli probiotic strains, maldi tof mass-spectrometry, RNA, Ribosomal, 16S, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, full genome sequencing, Humans, Genome, Bacterial, Phylogeny
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 1 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
