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Infection
Article . 2023 . Peer-reviewed
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Infection
Article . 2024
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Characterization of blaOXA-48-carrying plasmids and small non-AMR-coding plasmids collected from Ukrainian patients

Authors: van Almsick, Vincent F.; Sobkowiak, Annika; Scherff, Natalie; Schuler, Franziska; Mellmann, Alexander; Schwierzeck, Vera;

Characterization of blaOXA-48-carrying plasmids and small non-AMR-coding plasmids collected from Ukrainian patients

Abstract

Abstract Purpose Carbapenemase-producing Enterobacterales (CPE) pose a serious threat for healthcare facilities worldwide, yet the mode of transmission is often unclear. Recently, we recorded an increase of blaOXA-48-harboring isolates at our hospital associated with patients with previous medical treatment in the Ukraine. We used long-read whole genome sequencing (lrWGS) to characterize these isolates including their plasmids. Methods Samples were collected as part of clinical routine diagnostic or screening of multi-drug resistance bacteria (MDRB). Antimicrobial susceptibility testing was performed and all MDRB (n = 10) were sequenced by lrWGS for genotyping, identification of antimicrobial resistance (AMR) genes, and characterization of plasmids. Results While routine analysis of core genome multilocus sequence typing (cgMLST) did not show any genetic similarities between isolates, we found an unexpected high similarity in the plasmid diversity of different Enterobacterales in patients with previous medical treatment in the Ukraine. This included an IncL/M plasmid carrying blaOXA-48 and additional small non-AMR-coding plasmids. Conclusion Our results show that lrWGS can be used in the routine setting to uncover similarities in plasmids and may give further information about potential epidemiologic associations. In the future, analysis of both AMR and non-AMR plasmids may provide an additional layer of information for molecular surveillance of CPE.

Country
Germany
Keywords

Brief Report, Plasmids/genetics [MeSH] ; Escherichia coli/genetics [MeSH] ; Multi-drug resistance bacteria ; Antimicrobial resistance ; Klebsiella pneumoniae/genetics [MeSH] ; Long-read whole genome sequencing ; Humans [MeSH] ; beta-Lactamases/genetics [MeSH] ; Brief Report ; Anti-Bacterial Agents/pharmacology [MeSH] ; Multilocus Sequence Typing/methods [MeSH] ; Plasmids ; Microbial Sensitivity Tests [MeSH], Microbial Sensitivity Tests, beta-Lactamases, Anti-Bacterial Agents, Klebsiella pneumoniae, Escherichia coli, Humans, Plasmids, Multilocus Sequence Typing

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    popularity
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    Top 10%
    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
4
Top 10%
Average
Average
Green
hybrid