When a network has relay nodes, there is a risk that a part of the information is leaked to an untrusted relay. Secure network coding (secure NC) is known as a method to resolve this problem, which enables the secrecy of the message when the message is transmitted over a noiseless network and a part of the edges or a part of the intermediate (untrusted) nodes are eavesdropped. If the channels on the network are noisy, the error correction is applied to noisy channels before the application of secure NC on an upper layer. In contrast, secure physical layer network coding (secure PLNC) is a method to securely transmit a message by a combination of coding operation on nodes when the network is composed of set of noisy channels. Since secure NC is a protocol on an upper layer, secure PLNC can be considered as a cross-layer protocol. In this paper, we compare secure PLNC with a simple combination of secure NC and error correction over several typical network models studied in secure NC.