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SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation

descriptionPublicationkeyboard_double_arrow_right Article , Other literature type , Preprint 06 Oct 2022Embargo end date: 01 Jan 2022 English Publisher:Oxford University Press (OUP)Journal:NAR Genomics and Bioinformatics, volume 4 (eissn: 2631-9268, Copyright policy )Funded by:NIH | Machine learning approach..., NIH | Machine learning approach..., NIH | Dfam: sustainable growth,...
Authors: Jack W Roddy; George T Lesica; Travis J Wheeler;

doi: 10.1093/nargab/lqac077 , 10.48550/arxiv.2205.06349

pmid: 36212708

pmc: PMC9535774

arXiv: 2205.06349

SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation

Abstract

Abstract We present SODA, a lightweight and open-source visualization library for biological sequence annotations that enables straightforward development of flexible, dynamic and interactive web graphics. SODA is implemented in TypeScript and can be used as a library within TypeScript and JavaScript.

Related Organizations
Keywords

Genomics (q-bio.GN), Application Notes, FOS: Biological sciences, Quantitative Biology - Genomics

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green
gold