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Proteogenomic profiling of lung adenocarcinoma reveals therapeutic targets for precision medicine

Authors: Abdülkadir Elmas;

Proteogenomic profiling of lung adenocarcinoma reveals therapeutic targets for precision medicine

Abstract

Lung cancer is the leading cause of cancer-related fatalities worldwide, impacting both men and women. A major challenge is its frequent diagnosis at advanced stages, which limits treatment options. While genomic and transcriptomic analyses have traditionally been used to identify potential drug targets, there remains an unexplored potential in targeting protein-level anomalies. This study systematically investigates the proteomic landscape of 109 primary lung adenocarcinoma (LUAD) tumors using comprehensive mass-spectrometry (MS) proteomics data. By focusing on kinases, the key actors in oncogenic signaling pathways, we aim to find new therapeutic targets for LUAD. Through intricate analyses encompassing tumor-normal differentials and inter-tumor variations, our study identifies notable overexpressed targets, including PLAU, MET, ERBB2, EGFR, PDK1 kinases, and THBS2, CRABP2, INPP4B proteins, many of which present no evidence of transcriptomic alteration. Several targets we identified through proposed approaches have corresponding inhibitor drugs, including ERBB2 kinase (Afatinib) and VEGF-A protein (Bevacizumab). Our findings validate known therapeutic markers in lung cancer and reveal candidate protein targets specific to LUAD, underscoring the efficacy of proteomic methodologies in advancing precision medicine for cancer.

Keywords

Semi- and Unsupervised Learning, Biomedical Therapy, Biyomedikal Bilimler ve Teknolojiler, Ağırlıklı k-en yakın komşu (KNN) algoritması;akciğer kanseri;proteomik metodolojiler;hedefe yönelik tedavi;hassas onkoloji, Biyomedikal Terapi, Biomedical Sciences and Technology, Weighted k-nearest neighbor (KNN) algorithm;lung adenocarcinoma;proteomics;targeted therapy;precision oncology, Yarı ve Denetimsiz Öğrenme

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
gold
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Cancer Research