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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao https://doi.org/10.1...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
https://doi.org/10.1109/isit44...
Article . 2020 . Peer-reviewed
License: IEEE Copyright
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Constrained Coding with Error Control for DNA-Based Data Storage

Authors: Tuan Thanh Nguyen; Kui Cai 0001; Kees A. Schouhamer Immink; Han Mao Kiah;

Constrained Coding with Error Control for DNA-Based Data Storage

Abstract

In this paper, we first propose coding techniques for DNA-based data storage which account the maximum homopolymer runlength and the GC-content. In particular, for arbitrary l,ϵ>0, we propose simple and efficient (l,ϵ)-constrained encoders that transform binary sequences into DNA base sequences (codewords), that satisfy the following properties:• Runlength constraint: the maximum homopolymer run in each codeword is at most l,• GC-content constraint: the GC-content of each codeword is within [0.5−ϵ, 0.5+ϵ].For practical values of l and ϵ, our codes achieve higher rates than the existing results in the literature. We further design efficient (l,ϵ)-constrained codes with error-correction capability. Specifically, the designed codes satisfy the runlength constraint, the GC-content constraint, and can correct a single edit (i.e. a single deletion, insertion, or substitution) and its variants. To the best of our knowledge, no such codes are constructed prior to this work.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
18
Top 10%
Top 10%
Top 10%
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