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GENETIC ALGORITHM WITH BAGGING FOR DNA CLASSIFICATION

Authors: Balamurugan E; Jackson Akpajaro;

GENETIC ALGORITHM WITH BAGGING FOR DNA CLASSIFICATION

Abstract

Accurate classification of cancer plays an important role for cancer treatment. The advancement of microarray technologies improves the accuracy of cancer diagnosis. Recently, scientists identify more informative genes from thousands of genes for accurate cancer detection. In this paper, Genetic Algorithm (GA) with bagging is developed for DeoxyriboNucleic Acid (DNA) classification. To remove the noise and data integrity, GA is applied to find the informative genes from the microarray data. It uses Backward Selection (BS), Forward Selection (FS) and Branch and Bound Selection (BBS) algorithms to select the sub-set of genes. Then bagging is employed to classify the selected genes to normal or abnormal. The evaluation of DNA classification system is performed on five cancers; colon, Central Nervous System (CNS), ovarian, leukemia and breast. Results show that the accuracy of GA-BBS with bagging algorithm is better than GA-BS and GA-FS with bagging. For all datasets, GA-BBS with bagging provides no misclassification and gives the highest performance (100%) in terms of sensitivity, accuracy and specificity. Based on results, it is concluded that ‘best’ prediction system is GA-BBS with bagging classifier.

Keywords

dna classification, genetic algorithm, feature selection, ensemble method, decision tree, bagging., Computer applications to medicine. Medical informatics, R858-859.7, TP248.13-248.65, Biotechnology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
6
Top 10%
Average
Top 10%
gold
Related to Research communities
Cancer Research