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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao https://doi.org/10.1...arrow_drop_down
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https://doi.org/10.1007/978-3-...
Part of book or chapter of book . 2022 . Peer-reviewed
License: Springer TDM
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Extension of Leap Condition in Approximate Stochastic Simulation Algorithms of Biological Networks with 2nd and 3rd order Taylor Expansion

Authors: PURUTÇUOĞLU, VİLDA; Demirbüken, Saliha;

Extension of Leap Condition in Approximate Stochastic Simulation Algorithms of Biological Networks with 2nd and 3rd order Taylor Expansion

Abstract

© 2022, The Author(s), under exclusive license to Springer Nature Switzerland AG.The approximate stochastic simulation algorithms are the alternative methods to simulate the complex biological systems with a loss in accuracy by acquiring from computational demand. These methods depend on the leap condition. Here, the study aims to construct an actual and close confidence interval for the parameter denoting the number of simultaneously reaction in the system, by expanding the leap condition and the hazard function by second and third order Taylor expansion in the same time. To reach the goal, we use the poisson τ -leap and approximate Gillespie algorithm. Moreover, we derive the maximum likelihood estimators (MLE) and the method of moment estimators (MME) of the simulation parameters and construct confidence interval estimators at a given significance level α for these extended version of algorithms. Finally, we theoretically present that the obtained k can generate more narrower results [1–5, 7, 10].

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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