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Substring Complexity in Sublinear Space

Authors: Giulia Bernardini 0001; Gabriele Fici; Pawel Gawrychowski; Solon P. Pissis;

Substring Complexity in Sublinear Space

Abstract

Shannon's entropy is a definitive lower bound for statistical compression. Unfortunately, no such clear measure exists for the compressibility of repetitive strings. Thus, ad hoc measures are employed to estimate the repetitiveness of strings, e.g., the size $z$ of the Lempel-Ziv parse or the number $r$ of equal-letter runs of the Burrows-Wheeler transform. A more recent one is the size $γ$ of a smallest string attractor. Let $T$ be a string of length $n$. A string attractor of $T$ is a set of positions of $T$ capturing the occurrences of all the substrings of $T$. Unfortunately, Kempa and Prezza [STOC 2018] showed that computing $γ$ is NP-hard. Kociumaka et al. [LATIN 2020] considered a new measure of compressibility that is based on the function $S_T(k)$ counting the number of distinct substrings of length $k$ of $T$, also known as the substring complexity of $T$. This new measure is defined as $δ= \sup\{S_T(k)/k, k\geq 1\}$ and lower bounds all the relevant ad hoc measures previously considered. In particular, $δ\leq γ$ always holds and $δ$ can be computed in $\mathcal{O}(n)$ time using $Θ(n)$ working space. Kociumaka et al. showed that one can construct an $\mathcal{O}(δ\log \frac{n}δ)$-sized representation of $T$ supporting efficient direct access and efficient pattern matching queries on $T$. Given that for highly compressible strings, $δ$ is significantly smaller than $n$, it is natural to pose the following question: Can we compute $δ$ efficiently using sublinear working space? We address this algorithmic challenge by showing the following bounds to compute $δ$: $\mathcal{O}(\frac{n^3\log b}{b^2})$ time using $\mathcal{O}(b)$ space, for any $b\in[1,n]$, in the comparison model; or $\tilde{\mathcal{O}}(n^2/b)$ time using $\tilde{\mathcal{O}}(b)$ space, for any $b\in[\sqrt{n},n]$, in the word RAM model.

Accepted to ISAAC 2023. Abstract abridged to satisfy arXiv requirements

Countries
Germany, Italy, Italy, France, Netherlands, Italy, France, Italy
Keywords

FOS: Computer and information sciences, substring complexity, sublinear-space algorithm; string algorithm; substring complexity, Settore INF/01 - Informatica, sublinear-space algorithm, [INFO] Computer Science [cs], string algorithm, 004, Computer Science - Data Structures and Algorithms, Data Structures and Algorithms (cs.DS), sublinear-space algorithm, string algorithm, substring complexity, string algorithm; sublinear-space algorithm; substring complexity, ddc: ddc:004

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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