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Influence of RNA circularity on Target RNA-Directed MicroRNA Degradation

تأثير دوران الحمض النووي الريبي على تحلل الحمض النووي الريبي المستهدف الموجه بالحمض النووي الريبي
Authors: Federico Fuchs Wightman; Jerónimo Lukin; Sebastián A. Giusti; Michael Soutschek; Laureano Bragado; Berta Pozzi; María L Pierelli; +7 Authors

Influence of RNA circularity on Target RNA-Directed MicroRNA Degradation

Abstract

Abstract A subset of circular RNAs (circRNAs) and linear RNAs have been proposed to ‘sponge’ or block microRNA activity. Additionally, certain RNAs induce microRNA destruction through the process of Target RNA-Directed MicroRNA Degradation (TDMD), but whether both linear and circular transcripts are equivalent in driving TDMD is unknown. Here, we studied whether circular/linear topology of endogenous and artificial RNA targets affects TDMD. Consistent with previous knowledge that Cdr1as (ciRS-7) circular RNA protects miR-7 from Cyrano-mediated TDMD, we demonstrate that depletion of Cdr1as reduces miR-7 abundance. In contrast, overexpression of an artificial linear version of Cdr1as drives miR-7 degradation. Using plasmids that express a circRNA with minimal co-expressed cognate linear RNA, we show differential effects on TDMD that cannot be attributed to the nucleotide sequence, as the TDMD properties of a sequence often differ when in a circular versus linear form. By analysing RNA sequencing data of a neuron differentiation system, we further detect potential effects of circRNAs on microRNA stability. Our results support the view that RNA circularity influences TDMD, either enhancing or inhibiting it on specific microRNAs.

Keywords

570, Cancer Research, Cell biology, Medical Sciences, MicroRNA Regulation in Cancer and Development, RNA Stability, Biophysics, Circular, 610, Biochemistry, Gene, Computational biology, Mice, https://purl.org/becyt/ford/1.6, Biochemistry, Genetics and Molecular Biology, RNA topology, Medical Specialties, Medicine and Health Sciences, RNA and RNA-protein complexes, MicroRNA Sponges, Genetics, Humans, Animals, Biogenesis and Functions of Circular RNAs, https://purl.org/becyt/ford/1, Non-coding RNA, Molecular Biology, Circular RNA, Biology, microRNA, Life Sciences, RNA, Circular, Small RNA, microRNAs, MicroRNAs, FOS: Biological sciences, Regulation of RNA Processing and Function, and Structural Biology, 570 Life sciences; biology, RNA, circRNAs, Circular RNAs, mRNA Decay

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
10
Top 10%
Average
Top 10%
Green
gold