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DIGITAL.CSIC
Dataset . 2024 . Peer-reviewed
Data sources: DIGITAL.CSIC
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Peptide 1 structure in the AliD:peptide 1 complex [Dataset]

Authors: Alcorlo, Martín; Abdullah, Mohammed R.; Steil, Leif; Sotomayor, Francisco; López de Oro, Laura; Castro, Sonia de; Velázquez, Sonsoles; +11 Authors

Peptide 1 structure in the AliD:peptide 1 complex [Dataset]

Abstract

(A) Binding of peptide 1 and 2 to heterologously expressed AliD as analyzed by microscale thermophoresis (MST). The concentration of NHS-RED-labeled AliD was kept constant (20 nM), while the concentration of the non-labeled peptides ranged between 7.63x10-6–0.125 mM. Samples were measured using the Monolith NT.115 (NanoTemper Technologies) at 40% LED power and medium MST power at 25° C. The Kd was calculated from three independent measurements, error bars represent the standard deviation. (B) Structural superposition of the two peptide 1 molecules (depicted as capped sticks) bound to AliD monomers A (gray) and B (yellow). The sequence of peptide 1 (FPPQSV) is indicated and numbered. N-term, amino-terminus; C-term, C-terminus. (C) Atomic B factors for peptide 1 as observed in the AliD:peptide 1 complex (monomer B). The Ligand is represented as capped sticks and colored based on the B-factor distribution, ranging from low (blue) to high (red) values. (D) Electron-density map (2mFo-DFc map contoured at 1.0 σ) for each of the two peptide 1 molecules (in green caped sticks) observed in the AliD:peptide 1 complex. The position of each peptide residue is numbered.

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Spain
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Keywords

Ami transporter system, Wide range, Structural analysis, Invasive infections, Energy balance, Silico modelling, Unexpected remarkable promiscuity, Cell surface, Multiple crystallographic structures, Mass spectrometry analysis, Ensure sufficient uptake, Uptake mechanism, Becomes indispensable, Structural basis, Shedding light, div >< p, Oligopeptide binding, Abc transporters, Diverse peptide specificities, Closed conformations along, Cellular cytoplasm, Streptococcus pneumoniae </, >, displaying affinity, Auxotrophic nature, Oligopeptides demonstrates, Substantial array, Produced de novo, Oligopeptide recognition, Transport systems, Escherichia coli </, Pneumococci, Binding cassette, Abc transporter channel, Certain amino acids, Four proteins building, Vivo implications, Orchestrating oligopeptide uptake

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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