Downloads provided by UsageCountsPairwise syntenic dot plots between chromosomes of jellyfish (RES) and bilaterian species [Dataset]
Lin, Che-Yi; Marlétaz, Ferdinand; Pérez-Posada, Alberto; Martínez-García, Pedro Manuel; Schloissnig, Siegfried; Peluso, Paul; Conception, Greg T.; +13 Authors
Lin, Che-Yi; Marlétaz, Ferdinand; Pérez-Posada, Alberto; Martínez-García, Pedro Manuel; Schloissnig, Siegfried; Peluso, Paul; Conception, Greg T.; Bump, Paul; Chen, Yi-Chih; Chou, Cindy; Lin, Ching-Yi; Fan, Tzu-Pei; Tsai, Chang-Tai; Gómez-Skarmeta, José Luis; Tena, Juan J.; Lowe, Christopher J.; Rank, David R.; Rokhsar, Daniel S.; Yu, Jr-Kai; Su, Yi-Hsien;
Pairwise syntenic dot plots between chromosomes of jellyfish (RES) and bilaterian species [Dataset]
The identified chromosomal rearrangement events in bilaterians are not found in the jellyfish genome. SPU3 was derived from DALG R, which dispersed into other chromosomes in chordates. Since SPU3 corresponds to RES19, the chordate dispersal event did not occur in the jellyfish (a). BFL3 and BFL16 correspond to different RES chromosomes, while their ALGs (DALGs B2 and C2) fused into ambulacraria AALG B2⊗C2. Thus, the ambulacrarian fusion event was not found in the jellyfish (b). Similarly, PYE1 and PYE17 both correspond to ambulacraria AALG B2⊗C2 and match to different RES chromosomes (c). The 4 shared fusion events in spiralians were not found in the jellyfish genome, as sea urchin chromosomes corresponding to fused spiralian chromosomes match to different jellyfish chromosomes (indicated by columns of the same color) (d). The data underlying this figure can be found in S1 Data.
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3 pre, Mixing event produced, 2 chromosomes, Chromosomal architecture, Ancestral condition, Also provide evidence, Deuterostome alg complement, Rearranged chromosomes, Includes hemichordata, Developmental genes, Hemichordate chromosomes, Another chromosome, div >< p, Generate chromosome, Monophyletic group, Extant hemichordates, Sea urchins, Relatively short transition, Deuterostome lineages, Scale macrosynteny, algs )., Regulatory controls, Exhibit remarkable chromosome, Lower densities, Different lineages, Transposable elements within, Level genome assemblies, Various developmental processes, Genetic changes, Deuterostome algs, Specific alg, Schizocardium californicum </, 2 Hemichordate species, n </, Events may, Established via, Assembled microsyntenic blocks, Likely due, Specific chromosomal modifications, Homologous alg, Delineate lineage, Deuterostome body plans, Subsequently split, Ptychodera flava </, Orthologous genes distributed, Deuterostome common ancestor, Highly rearranged chromosomes
3 pre, Mixing event produced, 2 chromosomes, Chromosomal architecture, Ancestral condition, Also provide evidence, Deuterostome alg complement, Rearranged chromosomes, Includes hemichordata, Developmental genes, Hemichordate chromosomes, Another chromosome, div >< p, Generate chromosome, Monophyletic group, Extant hemichordates, Sea urchins, Relatively short transition, Deuterostome lineages, Scale macrosynteny, algs )., Regulatory controls, Exhibit remarkable chromosome, Lower densities, Different lineages, Transposable elements within, Level genome assemblies, Various developmental processes, Genetic changes, Deuterostome algs, Specific alg, Schizocardium californicum </, 2 Hemichordate species, n </, Events may, Established via, Assembled microsyntenic blocks, Likely due, Specific chromosomal modifications, Homologous alg, Delineate lineage, Deuterostome body plans, Subsequently split, Ptychodera flava </, Orthologous genes distributed, Deuterostome common ancestor, Highly rearranged chromosomes
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