Figure S1: PCA of genomic signatures based on hexamer frequencies of the reference bacteria; Figure S2: k4freq-based distances of the bacterial genera to the reference phages; Figure S3: ROC curves for k4freq and k14exact; Figure S4: Statistical error analysis for different k-mer options; Figure S5: k14exact-based distances of the bacterial genera to the reference phages; Figure S6: Distances of 75 Klebsiella strains to 41 Klebsiella phages; Table S1: Bacterial genomes in the reference set; Table S2: Phage genomes in the reference set; Table S3: Plasmids in the reference set; Table S4: Summary of statistical comparisons of genomic distances; Table S5: Lysogenic activity of K. pneumoniae phages; Table S6: Bacterial single-cells and phages detected in their assemblies.

Peer reviewed