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Annotation Table - Whole Body Transcriptomes Of The Tick Ixodes Ricinus At Different Stage And Feeding Conditions

Authors: N Pierre Charrier; Marjorie Couton; Maarten J Voordouw; Olivier Rais; Axelle Durand-Hermouet; Caroline Hervet; Olivier Plantard; +1 Authors

Annotation Table - Whole Body Transcriptomes Of The Tick Ixodes Ricinus At Different Stage And Feeding Conditions

Abstract

Annotation table for a de novo assembled transcriptome of Ixodes ricinus in different stages and conditions. Description of the fields of each column (Trinotate results, and additionnal statistics): 1. Contig_name: name of the contig (Trinity assembly) 2. sprot_Top_BLASTX_hit: first hit of the blastx search against SwissProt (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/) 3. TrEMBL_Top_BLASTX_hit: first hit of the blastx search against Uniref90 (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/) 4. RNAMMER: identification of non-coding RNAs 5. prot_id: identifier of the predicted protein (TransDecoder) 6. prot_coords: coordinates (start, end and strand) of the predicted protein on the contig 7. sprot_Top_BLASTP_hit: first hit of the blastp search between the predicted protein and SwissProt (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/) 8. TrEMBL_Top_BLASTP_hit: first hit of the blastp search between the predicted protein and Uniref90 (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/) 9. Pfam: result of the search against PfamA database 10. SignalP: prediction of a signal peptide with SignalP 11. TmHMM: prediction of a transmembrane domain with THMM 12. eggnog: eggNOG database of orthologous genes (v3.0) assignation 13. gene_ontology_blast: GO assignation based on blast results 14. gene_ontology_pfam: GO assignation based on pfam results 15. Contig_length: length of the contig in bp 16. Busco_Id: name of the BUSCO (v1) 17. Busco_status: status of the BUSCO (complete/fragmented/duplicated) 18-32: Kallisto read counts for the 15 libraries A, B, C: unfed nymphs (replicates 1, 2, 3) D, E, F: partially fed nymphs (replicates 1, 2, 3) G, H, I: males (unfed) (replicates 1, 2, 3) J, K, L: unfed adult females (replicates 1, 2, 3) M, N, O: partially fed adult females (replicates 1, 2, 3) 33. log2FoldChange_UnfedVsPartiallyFed: log fold change in base 2 of expression (comparison between "unfed" -including males- and "fed" ticks) 34. pvalue_UnfedVsPartiallyFed: p-value of the comparison between "unfed" -including males- and "fed" ticks 35. log2FoldChange_MaleVsFemale: log fold change in base 2 of expression (comparison between "males" and "females") 36. pvalue_MaleVsFemale: p-value of the comparison between "males" and "females" 37. log2FoldChange_NymphsVsAdults: log fold change in base 2 of expression (comparison between "nymphs" and "adults" -males and females-) 38. pvalue_NymphsVsAdults: p-value of the comparison between "nymphs" and "adults" -males and females-)

Fixed column 8 (blastp result on TrEMBL)

Related Organizations
Keywords

Ixodes ricinus, RNA-Seq, De novo assembly, Expression profiling, Polymorphism

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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