{"references": ["Marzella DF, Parizi FM, van Tilborg D, Renaud N, Sybrandi D, Buzatu R, Rademaker DT, 't Hoen PAC, Xue LC. PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes. Front Immunol. 2022 May 10;13:878762. doi: 10.3389/fimmu.2022.878762. PMID: 35619705; PMCID: PMC9127323.", "Ramakrishnan G, Baakman C, Heijl S, Vroling B, van Horck R, Hiraki J, Xue LC, Huynen MA. Understanding structure-guided variant effect predictions using 3D convolutional neural networks. Front Mol Biosci. 2023 Jul 5;10:1204157. doi: 10.3389/fmolb.2023.1204157. PMID: 37475887; PMCID: PMC10354367."]}

This data contains raw PDB files and other metadata that can be used to run DeepRank2 tutorials for processing and later training on protein-protein interfaces and protein structures containing single residue variants. The PDB files in data_raw/ppi/ folder have been generated using PANDORA software. The PDB files in data_raw/srv/ folder have been retrieved from Ramakrishnan et al.