ANANSE: REMAP genome coverage

hg38: Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg38). All peaks in bed format (https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz) were computed to bigwig format using: zcat remap2022_all_macs2_hg38_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg38.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg38.fa.sizes -i - > tmp.bg && bedGraphToBigWig tmp.bg / hg38.fa.sizes remap2022.hg38.w50.bw && rm tmp.bg hg19: Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg19). All peaks in bed format (https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz) were computed to bigwig format using: zcat remap2022_all_macs2_hg19_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg19.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg19.fa.sizes -i - > tmp.bg && bedGraphToBigWig tmp.bg / hg19.fa.sizes remap2022.hg19.w50.bw && rm tmp.bg

Related Organizations

Radboud University Nijmegen
Netherlands

Keywords

ANANSE

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average