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ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2020
License: CC BY
Data sources: ZENODO
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Benchmark data used in the evaluation of ChiRA tool-suite.

Authors: Pavankumar Videm;

Benchmark data used in the evaluation of ChiRA tool-suite.

Abstract

The reads generated mimic CLASH experimental data. Each read is a fusion of a human hg38 miRBase mature miRNAs and some random TargetScan target sequences. The numbers 10, 12, 15, 18, and 20 in the file names represent the length of the chimeric arms. The are 1million reads in FASTA file. Files with "Insert" in their names contain a short 5 nt random sequence, whereas the "noInsert" files do not. TargetScanSites_merged.fa.fasta and hg38_MIR_mature.fa.fasta contain the reference sequences. The sequence identifiers in the FASTA file are in the following format: >hsa-miR-193b-5p_MIMAT0004767:1-20||chr7:114656010-114656173+:82-95 where, hsa-miR-193b-5p_MIMAT0004767 is the sequence ID of the miRNA from which first chimeric arm of this read was derived from. This ID can be found in hg38_MIR_mature.fa.fasta. 1-20 represents the 1-based start and end positions on hsa-miR-193b-5p_MIMAT0004767 representing the origin of the first chimeric arm. chr7:114656010-114656173+ is the sequence ID of the TargetScan target site from which the second chimeric arm of this read was derived from. This ID can be found in TargetScanSites_merged.fa.fasta 82-95 represents the 1-based start and end positions on chr7:114656010-114656173+ representing the origin of the second chimeric arm.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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