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GTEx gene-level expression summary for Snaptron

Research datakeyboard_double_arrow_right Dataset 25 Feb 2019Publisher:ZenodoFunded by:NIH | Identification and valida..., NIH | Harnessing GTEx to Create..., NIH | Statistical analysis of g... +6 projects

Authors: Langmead, Benjamin; Wilks, Christopher;

doi: 10.5281/zenodo.2577439 , 10.5281/zenodo.2577438

GTEx gene-level expression summary for Snaptron

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Abstract

GTEx gene-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip, along with supplementary files containing a Tabix index for the data (ending in tbi) as well as two files describing the samples represented in the columns of the data file (ending in tsv). Uses GENCODE v25 annotation for quantification. Source data for the quantification are the bigWig files produced as part of recount2. More information at http://snaptron.cs.jhu.edu.

Supported by NIH grant R01GM118568 to BL and NIH Cloud Credits Pilot award CCREQ-2017-03-00086 to BL

Related Organizations

Johns Hopkins University
United States

Keywords

gtex, exon, summary, rna-seq

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7 Research products, page 1 of 1

GTEx exon-level expression summaries for Snaptron
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Reproducible RNA-seq analysis using recount2
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Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples
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GTEx exon-level expression summary
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GTEx exon-exon-junction-level expression summary for Snaptron
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Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average