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ZENODO
Dataset . 2017
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2017
License: CC BY
Data sources: ZENODO
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Dppc Monolayer Simulations With Slipids+Opc

Authors: Javanainen, Matti; Cwiklik, Lukasz;

Dppc Monolayer Simulations With Slipids+Opc

Abstract

DPPC monolayers simulated at a varying area per lipid in the NVT ensemble. The Slipids lipid model [1] is employed together with the 4-point OPC water model [2]. Each system contains two monolayers with 64 lipids each with a change in simulation box size, except for the system titled 'large'. '200large' contains 128 lipids per monolayer, '400large' 64 lipids per monolayer and '1500large' 17 lipids per monolayer. These 'large' monolayers all have the same simulation box size. All monolayers are separated by a water slab, and surrounded by vacuum. The number in the filename corresponds to the area per lipid in Ångströms. The starting structures were taken from [3], which also provides detailed information on system setup. The simulations in [3] used TIP3P water, which was replaced by OPC, followed by energy minimization and production runs. The 'large' monolayers were generated from the system 'md100' by replicating it four-fold (2x2) and subsequently removing lipids until the desired area per lipid was reached. All trajectories, 100 ns long, are simulated with Gromacs 4.6.x [4] using the parameters given in the mdp file. The topologies for the lipids can be obtained from http://www.fos.su.se/~sasha/SLipids/Downloads.html and for the OPC water model from https://bioinformatics.cs.vt.edu/~izadi/ . Note that .top and .ndx files are for all systems except for the "large" ones. [1] DOI: 10.1021/jp101759q [2] DOI: 10.1021/jz501780a [3] DOI: 10.1016/j.bbamem.2016.09.015 [4] DOI: 10.1093/bioinformatics/btt055

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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