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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Test small datasets for Shiba and scShiba

Research datakeyboard_double_arrow_right Dataset 05 Mar 2025Publisher:Zenodo
Authors: Kubota, Naoto;

doi: 10.5281/zenodo.14976390 , 10.5281/zenodo.14976391

Test small datasets for Shiba and scShiba

Abstract

This repository provides example inputs for Shiba, a versatile computational method for systematic identification of differential RNA splicing across platforms (https://github.com/Sika-Zheng-Lab/Shiba). test_shiba.tar.gz contains four RNA-seq bam files (Ref_1.bam, Ref_2.bam, Alt_1.bam, Alt_2.bam). Useful for testing Shiba and SnakeShiba pipelines. test_scshiba.tar.gz contains a text file that describes barcodes and corresponding clusters (Cluster-1 or Cluster-2) and STARsolo outputs. Useful for testing scShiba and SnakeScShiba pipelines.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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