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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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scCamAge Datasets

Authors: Gautam, Vishakha; Duari, Subhadeep; Ahuja, Gaurav;

scCamAge Datasets

Abstract

This repository contains all the raw image or quantification datasets used for building or validating scCamAge, a transfer learning-based AI method for chronological age prediction of single yeast cells using phase contrast microscopic images. Folder Descriptions scCamAge Predictor Module: Main_camAge.tar.zip This folder contains refined phase contrast images of yeast single cells at ten critical time points, ranging from day 2 (young) to day 20 (aged) of chronological aging. Molecular Dyes-Based: Dyes.zip This folder is divided into three subfolders containing refined phase contrast images for TMRE, H2DCFDA, and FM™ 4-64FX. These images cover ten critical time points of chronologically aging yeast cells from day 2 (young) to day 20 (aged). Treatment-Based Method: Drugs.zip This folder includes three subfolders with refined phase contrast images of yeast cells treated with etoposide, azacytidine, and MG132 at different concentrations. Pro-Longevity Drugs and Knockouts: KOs.zip This folder contains refined micrographs of yeast cells treated with pro-longevity drugs (metformin, spermidine, and spermine) and genetic knockouts (pro or anti-longevity) at ten critical time points from day 2 (young) to day 20 (aged). Human Datasets: Human.zip This folder includes refined micrographs of human datasets, specifically the Camptothecin (CPT)-induced human fibroblast senescence dataset and replicative senescence dataset taken from Strum et al. (2022; DOI: 10.1038/s41597-022-01852-y). Trained Models: Model.zip This folder contains trained models for CamAge, molecular dyes-based methods, and treatment-based methods. Raw and Normalized Matrix: Raw_and_Normalized Matrix_RNA seq_And_Raw_metabolomics_data.xlsx This Excel file includes raw and normalized matrices for RNA sequencing and raw matrices for metabolomics analysis. Segmentation Weights: yeast_segmentation-master.zip This folder contains weights and scripts for yeast cell segmentation.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average