canSAR is an integrated cancer research and drug discovery resource that brings together large-scale data from different disciplines and allows query and exploration to help cancer research and drug discovery.
The EMODnet geology portal provides free access to (i) geological data and metadata held by various geoscience organisations in Europe, delivered in accordance with international standards, and (ii) geological data products compiled at scales of 1:1,000,000, 1:250,000 and 1:100,000 or finer where the underlying data permit.
re3data: r3d100013968
CHILDdb provides an opportunity for researchers to explore CHILD data to study genetic and environmental factors influencing child health and development.
re3data: r3d100011928
The FAIRDOMHub is a publicly available repository managed and supported by the FAIRDOM consortium (https://fair-dom.org/). It's build using the FAIRDOM-SEEK software (http://fairdomseek.org), an open source web platform for storing, sharing and publishing research assets of biology projects. The assets include FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models. FAIRDOMHub enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship. FAIRDOMHub includes special support for the Systems Biology community.
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.
The public PIPPA interface provides access to the raw phenotypic data and linked metadata, making the data FAIR based on the MIAPPE standard. API calls are available for expert users to perform customized data requests. Through implementation of the Breeding API (BrAPI), PIPPA serves as a data provider for FAIDARE, an international portal to facilitate the discoverability of public data on plant biology. Bioschemas markup has been added to PIPPA to improve the findability of the data via public search engines.
The Arabidopsis Information Portal (Araport) is an open-access online community resource for Arabidopsis research. Araport enables biologists to navigate from the Arabidopsis thaliana Col-0 reference genome sequence to its associated annotation including gene structure, gene expression, protein function, and interaction networks. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services. Araport is free and open-source. Registered members can save their analysis, publish science apps, and post announcements.
ISA-explorer stores information in the ISA-Tab metadata format to facilitate dataset discovery for the journal Scientific Data. Published Scientific Data ISA-Tab files can be easily read and explored via this repository. The ISA model records the data’s provenance, how it was generated and where it is located – all prerequisites of publication with Scientific Data. The ISA-Tab metadata file is used to generate the Structured Summary table that appears after the abstract in every Data Descriptor article.
re3data: r3d100010975
The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast Saccharomyces cerevisiae.
EpiFactors is a web-accessible database that provides broad information about human proteins and complexes involved in epigenetic regulation. It also lists corresponding genes and their expression levels in several samples, in particular 458 human primary cell samples, 255 different cancer cell lines and 134 human post-mortem tissues. Each protein and complex entry has been provided with links to external public resources.
canSAR is an integrated cancer research and drug discovery resource that brings together large-scale data from different disciplines and allows query and exploration to help cancer research and drug discovery.
The EMODnet geology portal provides free access to (i) geological data and metadata held by various geoscience organisations in Europe, delivered in accordance with international standards, and (ii) geological data products compiled at scales of 1:1,000,000, 1:250,000 and 1:100,000 or finer where the underlying data permit.
re3data: r3d100013968
CHILDdb provides an opportunity for researchers to explore CHILD data to study genetic and environmental factors influencing child health and development.
re3data: r3d100011928
The FAIRDOMHub is a publicly available repository managed and supported by the FAIRDOM consortium (https://fair-dom.org/). It's build using the FAIRDOM-SEEK software (http://fairdomseek.org), an open source web platform for storing, sharing and publishing research assets of biology projects. The assets include FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models. FAIRDOMHub enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship. FAIRDOMHub includes special support for the Systems Biology community.
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.
The public PIPPA interface provides access to the raw phenotypic data and linked metadata, making the data FAIR based on the MIAPPE standard. API calls are available for expert users to perform customized data requests. Through implementation of the Breeding API (BrAPI), PIPPA serves as a data provider for FAIDARE, an international portal to facilitate the discoverability of public data on plant biology. Bioschemas markup has been added to PIPPA to improve the findability of the data via public search engines.
The Arabidopsis Information Portal (Araport) is an open-access online community resource for Arabidopsis research. Araport enables biologists to navigate from the Arabidopsis thaliana Col-0 reference genome sequence to its associated annotation including gene structure, gene expression, protein function, and interaction networks. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services. Araport is free and open-source. Registered members can save their analysis, publish science apps, and post announcements.
ISA-explorer stores information in the ISA-Tab metadata format to facilitate dataset discovery for the journal Scientific Data. Published Scientific Data ISA-Tab files can be easily read and explored via this repository. The ISA model records the data’s provenance, how it was generated and where it is located – all prerequisites of publication with Scientific Data. The ISA-Tab metadata file is used to generate the Structured Summary table that appears after the abstract in every Data Descriptor article.
re3data: r3d100010975
The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast Saccharomyces cerevisiae.
EpiFactors is a web-accessible database that provides broad information about human proteins and complexes involved in epigenetic regulation. It also lists corresponding genes and their expression levels in several samples, in particular 458 human primary cell samples, 255 different cancer cell lines and 134 human post-mortem tissues. Each protein and complex entry has been provided with links to external public resources.