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Minimum Information about a Biosynthetic Gene Cluster Repository
Data Repository Netherlands, Denmark Compatibility:Not yet registeredPartners:WUR, Novo Nordisk Foundation Center for Biosustainability Genomics, Microbiology, Genome
WUR,
Novo Nordisk Foundation Center for Biosustainability
doi: 10.25504/fairsharing.51c536
doi: 10.25504/fairsharing.51c536
Website URL: https://mibig.secondarymetabolites.org/repository
The MIBiG (Minimum Information about a Biosynthetic Gene Cluster) Repository stores Biosynthetic Gene Clusters (BGC) that are manually curated through community efforts. It is a central reference database for BGCs of known function, and provides the basis for comparative analyses for a number of tools. It has enabled many computational analyses of BGC function and novelty central to both small and large-scale studies of microbes and microbial communities.
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Grand Challenge Data Collection
Data Repository United States Compatibility:Not yet registeredPartners:Carnegie Mellon University, Qualiy of Life Technologies Center, NSF, Carnegie Mellon University, Robotics Institute Humanities and Social Sciences, Engineering Sciences, Computer Science
Carnegie Mellon University, Qualiy of Life Technologies Center,
NSF,
Carnegie Mellon University, Robotics Institute
re3data: r3d100012191
re3data: r3d100012191
Website URL: http://kitchen.cs.cmu.edu/
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Clinical Knowledgebase
Data Repository United States Compatibility:Not yet registeredPartners:Jackson Laboratory Genomics, Biomedical Science, Preclinical Studies
Jackson Laboratory
doi: 10.25504/fairsharing.e5y0j0
doi: 10.25504/fairsharing.e5y0j0
Website URL: https://jax.org/ckb
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
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GlyConnect
Data Repository Switzerland Compatibility:Not yet registeredPartners:SIB Life Science, Protein interaction, Protein Analysis
SIB
doi: 10.25504/fairsharing.b4a3cc
doi: 10.25504/fairsharing.b4a3cc
Website URL: https://glyconnect.expasy.org/
GlyConnect is a knowledgebase of glycoproteins spanning protein, glycosite and glycan information. It is a platform designed to investigate the relationships between glycans, the proteins that carry them and the proteins that bind them via the UniLectin sister project. The underlying database stores curated data on glycosylation extracted from literature and preserving the contextual information relative to species, original cell line, tissue and disease. GlyConnect is the central resource of the Glyco@Expasy collection hosted at SIB - Swiss Institute of Bioinformatics.
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SeedMe
Data Repository United States Compatibility:Not yet registeredPartners:SDSC, NSF Life Sciences, Agriculture, Forestry, Horticulture and Veterinary Medicine, Natural Sciences
SDSC,
NSF
re3data: r3d100012420
re3data: r3d100012420
Website URL: https://www.seedme.org/
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Florida State University ETD Collection
Publication Repository Compatibility:Not yet registered {Multidisciplinary}
Website URL: http://etd.lib.fsu.edu/
This site provides access to the theses and dissertation output of the institution from 2003. The interface is in English.
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NORPERM
Data Repository Norway, Svalbard and Jan Mayen Compatibility:Not yet registeredPartners:NGU, UNIS Natural Sciences, Geophysics and Geodesy, Geophysics
NGU,
UNIS
re3data: r3d100013708
re3data: r3d100013708
Website URL: https://geo.ngu.no/kart/permafrost_mobil/
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Mimotope Database
Data Repository Compatibility:Not yet registered Life Science, Peptide, Peptide library
doi: 10.25504/fairsharing.bv0zjz
doi: 10.25504/fairsharing.bv0zjz
Website URL: http://immunet.cn/mimodb
Mimotope database, active site-mimicking peptides selected from phage-display libraries. It is a database which stores information on peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues, organs, and even entire organisms through phage display technology. Besides the peptide sequences, other information such as the corresponding target, template, library, and structures are also stored. All entries are manually extracted from published peer review articles and other public data sources such as Uniprot, GenBank and PDBSum.
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Åbo Akademi University Research Portal

Institutional Repository Finland Compatibility:Not yet registeredPartners:Åbo Akademi University

Website URL: https://research.abo.fi

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The City of Saint John Open Data
Data Repository Canada Compatibility:Not yet registeredPartners:City of Saint John Humanities and Social Sciences, Social Sciences, Social and Behavioural Sciences
City of Saint John
re3data: r3d100012975
re3data: r3d100012975
Website URL: https://catalogue-saintjohn.opendata.arcgis.com/
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11,068 Data sources

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Minimum Information about a Biosynthetic Gene Cluster Repository
Data Repository Netherlands, Denmark Compatibility:Not yet registeredPartners:WUR, Novo Nordisk Foundation Center for Biosustainability Genomics, Microbiology, Genome
WUR,
Novo Nordisk Foundation Center for Biosustainability
doi: 10.25504/fairsharing.51c536
doi: 10.25504/fairsharing.51c536
Website URL: https://mibig.secondarymetabolites.org/repository
The MIBiG (Minimum Information about a Biosynthetic Gene Cluster) Repository stores Biosynthetic Gene Clusters (BGC) that are manually curated through community efforts. It is a central reference database for BGCs of known function, and provides the basis for comparative analyses for a number of tools. It has enabled many computational analyses of BGC function and novelty central to both small and large-scale studies of microbes and microbial communities.
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Grand Challenge Data Collection
Data Repository United States Compatibility:Not yet registeredPartners:Carnegie Mellon University, Qualiy of Life Technologies Center, NSF, Carnegie Mellon University, Robotics Institute Humanities and Social Sciences, Engineering Sciences, Computer Science
Carnegie Mellon University, Qualiy of Life Technologies Center,
NSF,
Carnegie Mellon University, Robotics Institute
re3data: r3d100012191
re3data: r3d100012191
Website URL: http://kitchen.cs.cmu.edu/
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Clinical Knowledgebase
Data Repository United States Compatibility:Not yet registeredPartners:Jackson Laboratory Genomics, Biomedical Science, Preclinical Studies
Jackson Laboratory
doi: 10.25504/fairsharing.e5y0j0
doi: 10.25504/fairsharing.e5y0j0
Website URL: https://jax.org/ckb
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
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GlyConnect
Data Repository Switzerland Compatibility:Not yet registeredPartners:SIB Life Science, Protein interaction, Protein Analysis
SIB
doi: 10.25504/fairsharing.b4a3cc
doi: 10.25504/fairsharing.b4a3cc
Website URL: https://glyconnect.expasy.org/
GlyConnect is a knowledgebase of glycoproteins spanning protein, glycosite and glycan information. It is a platform designed to investigate the relationships between glycans, the proteins that carry them and the proteins that bind them via the UniLectin sister project. The underlying database stores curated data on glycosylation extracted from literature and preserving the contextual information relative to species, original cell line, tissue and disease. GlyConnect is the central resource of the Glyco@Expasy collection hosted at SIB - Swiss Institute of Bioinformatics.
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SeedMe
Data Repository United States Compatibility:Not yet registeredPartners:SDSC, NSF Life Sciences, Agriculture, Forestry, Horticulture and Veterinary Medicine, Natural Sciences
SDSC,
NSF
re3data: r3d100012420
re3data: r3d100012420
Website URL: https://www.seedme.org/
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Florida State University ETD Collection
Publication Repository Compatibility:Not yet registered {Multidisciplinary}
Website URL: http://etd.lib.fsu.edu/
This site provides access to the theses and dissertation output of the institution from 2003. The interface is in English.
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NORPERM
Data Repository Norway, Svalbard and Jan Mayen Compatibility:Not yet registeredPartners:NGU, UNIS Natural Sciences, Geophysics and Geodesy, Geophysics
NGU,
UNIS
re3data: r3d100013708
re3data: r3d100013708
Website URL: https://geo.ngu.no/kart/permafrost_mobil/
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Mimotope Database
Data Repository Compatibility:Not yet registered Life Science, Peptide, Peptide library
doi: 10.25504/fairsharing.bv0zjz
doi: 10.25504/fairsharing.bv0zjz
Website URL: http://immunet.cn/mimodb
Mimotope database, active site-mimicking peptides selected from phage-display libraries. It is a database which stores information on peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues, organs, and even entire organisms through phage display technology. Besides the peptide sequences, other information such as the corresponding target, template, library, and structures are also stored. All entries are manually extracted from published peer review articles and other public data sources such as Uniprot, GenBank and PDBSum.
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Åbo Akademi University Research Portal

Institutional Repository Finland Compatibility:Not yet registeredPartners:Åbo Akademi University

Website URL: https://research.abo.fi

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The City of Saint John Open Data
Data Repository Canada Compatibility:Not yet registeredPartners:City of Saint John Humanities and Social Sciences, Social Sciences, Social and Behavioural Sciences
City of Saint John
re3data: r3d100012975
re3data: r3d100012975
Website URL: https://catalogue-saintjohn.opendata.arcgis.com/
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Filters

Type

Language

Compatibility Level

Country

Collected from

Thematic

Jurisdiction

Minimum Information about a Biosynthetic Gene Cluster Repository

Grand Challenge Data Collection

Clinical Knowledgebase

GlyConnect

SeedMe

Florida State University ETD Collection

NORPERM

Mimotope Database

Åbo Akademi University Research Portal

The City of Saint John Open Data

Minimum Information about a Biosynthetic Gene Cluster Repository

Grand Challenge Data Collection

Clinical Knowledgebase

GlyConnect

SeedMe

Florida State University ETD Collection

NORPERM

Mimotope Database

Åbo Akademi University Research Portal

The City of Saint John Open Data

Filters

Type

Language

Compatibility Level

Country

Collected from

Thematic

Jurisdiction

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