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10,493 Data sources

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  • The Department of Energy Systems Biology Knowledgebase

    Data Repository United States Not yet registered ANL, ORNL, TSU Soil Science, Plant Ecology, Environmental Science

    doi: 10.25504/fairsharing.jsxqrk

    re3data: r3d100012864

    Website URL: https://www.kbase.us

    KBase is a large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide an integrated environment where knowledge and insights are created and multiplied.

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  • Repositorio

    Institutional Repository Peru Not yet registered Universidad Autónoma San Francisco
    Website URL: https://repositorio.uasf.edu.pe/
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  • Maltepe University Institutional Repository

    Institutional Repository Turkey OpenAIRE 3.0 (OA, funding) Maltepe University Multidisciplinary
    Website URL: http://openaccess.maltepe.edu.tr
    OAI-PMH URL: http://openaccess.maltepe.edu.tr/oai/request

    This repository hosts the research output of the institution. The interface is available in Turkish and English.

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  • Thunder Bay Open Data Portal

    Data Repository Canada Not yet registered Thunder Bay Humanities and Social Sciences, Life Sciences, Natural Sciences

    re3data: r3d100014051

    Website URL: https://opendata.thunderbay.ca/
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  • Musa Germplasm Information System

    Data Repository Italy Not yet registered Bioversity International, Rome, Italy Biodiversity, Life Science, DNA structural variation

    doi: 10.25504/fairsharing.kthr0s

    Website URL: https://www.crop-diversity.org/mgis/

    The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.

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  • Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts

    Data Repository Japan Not yet registered Division of Translational Genomics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Chiba, Japan, JSPS Epigenetics, Life Science, Transcriptomics

    doi: 10.25504/fairsharing.3fa02d

    Website URL: http://kero.hgc.jp/

    The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to enable further in-depth analyses on the disease-causing molecular mechanisms. Recent additions include genomic variation datasets and epigenome variation datasets focusing on the Japanese population. These datasets were collected as a series of genome-wide association studies and as part of International Human Epigenome Consortium (IHEC) projects. The goal is to have this database serve as a model case for the genomic, epigenomic and transcriptomic variations occurring in particular ethnic backgrounds and underlying various diseases. Clinical samples data were also associated with data from various model systems such as drug perturbation datasets using cultured cancer cells.

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  • DEG

    Data Repository China (People's Republic of) Not yet registered TUBIC Life Sciences, Basic Biological and Medical Research, General Genetics

    re3data: r3d100011275

    Website URL: http://tubic.tju.edu.cn/deg/
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  • Open Toxicogenomics Project-Genomics Assisted Toxicity Evaluation system

    Data Repository Japan Not yet registered National Institutes of Biomedical Innovation, Health and Nutrition, Japan Toxicogenomics, Biomedical Science, Pathology
    Website URL: http://toxico.nibiohn.go.jp/english/

    Open TG-GATEs is a public toxicogenomics database developed so that a wider community of researchers could utilize the fruits of TGP and TGP2 research. This database provides public access to data on 170 of the compounds catalogued in TG-GATEs. Data searching can be refined using either the name of a compound or the pathological findings by organ as the starting point. Gene expression data linked to phenotype data in pathology findings can also be downloaded as a CEL(*)file.

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  • EdUHK Research Repository

    Institutional Repository China (People's Republic of) Not yet registered HKIEd
    Website URL: http://repository.lib.eduhk.hk/
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  • European Medical Information Framework Catalogue

    Data Repository European Union, Portugal Not yet registered IMI, University of Aviero Medical Informatics, Biobank, Disease process modeling

    doi: 10.25504/fairsharing.gewcy6

    Website URL: https://emif-catalogue.eu

    The EMIF catalogue contains extensive metadata on a number of European health data resources, such as registries, EHRs, biobanks etc., organized by a number of communities, such as EMIF-EHR, EMIF-AD, EPAD, ADVANCE, BigData@Heart, PIONEER etc. The metadata collected is the data available, the data governance procedures, contact details etc. The catalogue intends to comprise different vertical projects through the creation of communities, such as EMIF-Electronic Health Record Data (EMIF-EHR) and EMIF-Alzheimer’s Disease (EMIF-AD), the BigData@Heart (for cardiovascular) and PIONEER (for prostate cancer) projects, supporting distinct databases and users.

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10,493 Data sources

  • The Department of Energy Systems Biology Knowledgebase

    Data Repository United States Not yet registered ANL, ORNL, TSU Soil Science, Plant Ecology, Environmental Science

    doi: 10.25504/fairsharing.jsxqrk

    re3data: r3d100012864

    Website URL: https://www.kbase.us

    KBase is a large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide an integrated environment where knowledge and insights are created and multiplied.

    more_vert

  • Repositorio

    Institutional Repository Peru Not yet registered Universidad Autónoma San Francisco
    Website URL: https://repositorio.uasf.edu.pe/
    more_vert

  • Maltepe University Institutional Repository

    Institutional Repository Turkey OpenAIRE 3.0 (OA, funding) Maltepe University Multidisciplinary
    Website URL: http://openaccess.maltepe.edu.tr
    OAI-PMH URL: http://openaccess.maltepe.edu.tr/oai/request

    This repository hosts the research output of the institution. The interface is available in Turkish and English.

    more_vert

  • Thunder Bay Open Data Portal

    Data Repository Canada Not yet registered Thunder Bay Humanities and Social Sciences, Life Sciences, Natural Sciences

    re3data: r3d100014051

    Website URL: https://opendata.thunderbay.ca/
    more_vert

  • Musa Germplasm Information System

    Data Repository Italy Not yet registered Bioversity International, Rome, Italy Biodiversity, Life Science, DNA structural variation

    doi: 10.25504/fairsharing.kthr0s

    Website URL: https://www.crop-diversity.org/mgis/

    The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.

    more_vert

  • Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts

    Data Repository Japan Not yet registered Division of Translational Genomics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Chiba, Japan, JSPS Epigenetics, Life Science, Transcriptomics

    doi: 10.25504/fairsharing.3fa02d

    Website URL: http://kero.hgc.jp/

    The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to enable further in-depth analyses on the disease-causing molecular mechanisms. Recent additions include genomic variation datasets and epigenome variation datasets focusing on the Japanese population. These datasets were collected as a series of genome-wide association studies and as part of International Human Epigenome Consortium (IHEC) projects. The goal is to have this database serve as a model case for the genomic, epigenomic and transcriptomic variations occurring in particular ethnic backgrounds and underlying various diseases. Clinical samples data were also associated with data from various model systems such as drug perturbation datasets using cultured cancer cells.

    more_vert

  • DEG

    Data Repository China (People's Republic of) Not yet registered TUBIC Life Sciences, Basic Biological and Medical Research, General Genetics

    re3data: r3d100011275

    Website URL: http://tubic.tju.edu.cn/deg/
    more_vert

  • Open Toxicogenomics Project-Genomics Assisted Toxicity Evaluation system

    Data Repository Japan Not yet registered National Institutes of Biomedical Innovation, Health and Nutrition, Japan Toxicogenomics, Biomedical Science, Pathology
    Website URL: http://toxico.nibiohn.go.jp/english/

    Open TG-GATEs is a public toxicogenomics database developed so that a wider community of researchers could utilize the fruits of TGP and TGP2 research. This database provides public access to data on 170 of the compounds catalogued in TG-GATEs. Data searching can be refined using either the name of a compound or the pathological findings by organ as the starting point. Gene expression data linked to phenotype data in pathology findings can also be downloaded as a CEL(*)file.

    more_vert

  • EdUHK Research Repository

    Institutional Repository China (People's Republic of) Not yet registered HKIEd
    Website URL: http://repository.lib.eduhk.hk/
    more_vert

  • European Medical Information Framework Catalogue

    Data Repository European Union, Portugal Not yet registered IMI, University of Aviero Medical Informatics, Biobank, Disease process modeling

    doi: 10.25504/fairsharing.gewcy6

    Website URL: https://emif-catalogue.eu

    The EMIF catalogue contains extensive metadata on a number of European health data resources, such as registries, EHRs, biobanks etc., organized by a number of communities, such as EMIF-EHR, EMIF-AD, EPAD, ADVANCE, BigData@Heart, PIONEER etc. The metadata collected is the data available, the data governance procedures, contact details etc. The catalogue intends to comprise different vertical projects through the creation of communities, such as EMIF-Electronic Health Record Data (EMIF-EHR) and EMIF-Alzheimer’s Disease (EMIF-AD), the BigData@Heart (for cardiovascular) and PIONEER (for prostate cancer) projects, supporting distinct databases and users.

    more_vert
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