software . 2015

Gene–Tissue Relationships From The Tissues Database

Daniel Himmelstein; Lars Juhl Jensen;
Open Access
  • Published: 09 Aug 2015
  • Publisher: Zenodo
Abstract
<p>We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:</p> <ul> <li>score_text: score from the text mining channel</li> <li>score_knowledge: score from the UniProtKB/knowledge channel</li> <li>score_experiment: integrated score from the experimental channel</li> <li>score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas</li> <li>score_integrated: integrated score combining everything</li> </ul>
Subjects
free text keywords: TISSUES, Rephetio
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Software . 2015
Provider: Datacite
Zenodo
Software . 2015
Provider: Zenodo
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software . 2015

Gene–Tissue Relationships From The Tissues Database

Daniel Himmelstein; Lars Juhl Jensen;