software . 2016

Burkholderia Cenocepacia Data Rna-Seq Analysis Scripts For Sass Et Al.

Sass, Andrea M.; Van Acker, Heleen; Förstner, Konrad U.; Van Nieuwerburgh, Filip; Deforce, Dieter; Vogel, Jörg; Coenye, Tom;
Open Source
  • Published: 05 May 2016
  • Publisher: Zenodo
Abstract
<p>These shell scripts are part of the publication &quot;Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315&quot; by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3).</p> <p>Please generate a folder &quot;FASTQ&quot; and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following:</p> <ul> <li>RNA_BF1_minus_TEX.fq.bz2</li> <li>RNA_BF1_plus_TEX.fq.bz2</li> <li>RNA_BF2_minus_TEX.fq.bz2</li> <li>RNA_BF2_plus_TEX.fq.bz2</li> </ul> <p>To perform the analysis run</p> <p>./run_analysis.sh</p> <p>Please make sure that the sof...
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Subjects
free text keywords: RNA-Seq, Burkholderia cenocepacia
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Zenodo
Software . 2016
Provider: Datacite
Zenodo
Software . 2016
Provider: Datacite
Zenodo
Software . 2016
Provider: Zenodo
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