software . 2018

Nextgenusfs/Amptk: Amptk V1.1.3

Love, Jon; Palmer, Jon; Stajich, Jason; Franzwagner Ternus; Mikryukov, Vladimir; Sjödin, Andreas;
Open Access
  • Published: 29 Mar 2018
  • Publisher: Zenodo
Abstract
<ul> <li>package has undergone a name change to reflect changes in the scripts. Originally the project started as essentially a wrapper for UPARSE and thus relied heavily on USEARCH. Coupled with originally supporting fungal ITS sequences, it was named UFITS (usearch fungal ITS). However, the current implementation of AMPtk relies very little on USEARCH and can support any amplicon based NGS dataset. Out of the box the following DB are packaged: fungal ITS, fungal LSU, 16S, insect/animal COI. Thus I feel that <code>amptk</code> is a better name that describes what the scripts do.</li> <li>option <code>-p, --pad</code> was added for <code>amptk ion</code>, <code>...
Zenodo
Software . 2018
Provider: Datacite
Zenodo
Software . 2018
Provider: Datacite
Zenodo
Software . 2018
Provider: Datacite
Zenodo
Software . 2017
Provider: Datacite
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software . 2018

Nextgenusfs/Amptk: Amptk V1.1.3

Love, Jon; Palmer, Jon; Stajich, Jason; Franzwagner Ternus; Mikryukov, Vladimir; Sjödin, Andreas;