software . 2021

Blanket Phylogenetic and genetic analyses of SARS-CoV-2 epidemiology

Goldberg, Emma; Romero-Severson, Ethan;
Open Source
  • Published: 02 Jul 2021
  • Publisher: DOE CODE
Abstract
I am submitting an umbrella/blanket disclosure because I am working on several inter-related projects in a fast-moving research area. The general theme is statistical analysis and visualization of SARS-CoV-2 viral genetic sequence data in order to learn about epidemiology. Examples of research questions are: How do viral genetic relationships relate to contact tracing links? How does viral genetics reflect signatures of transmission from one person to another? Do some genetic variants have a consistent transmission advantage?
Subjects
Medical Subject Headings: viruses
Communities
Communities with gateway
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