HINT-ATAC

Software OPEN SOURCE
Zhijian Li; Marcel H. Schulz; Thomas Look; Matthias Begemann; Martin Zenke; Ivan G. Costa;
(2019)
  • Publisher: Figshare
  • Related identifiers: doi: 10.5281/zenodo.2540828
  • Subject: transcription factor binding sites | Computational footprinting | strand-specific cleavage patterns | Developmental Biology | transcription factor binding | Computational Biology | cleavage events | Cell Biology | Genetics | ATAC-seq protocol artefact | Biochemistry | nucleosome architecture | HINT-ATAC Transposase-Accessible Chromatin | cleavage preferences | position dependency model | footprinting method | Biophysics
    • FOR: 59999 Environmental Sciences not elsewhere classified | 110309 Infectious Diseases | 69999 Biological Sciences not elsewhere classified | 39999 Chemical Sciences not elsewhere classified
    mesheuropmc: genetic processes

<p>Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) is a simple protocol for detection of<br> open chromatin. Computational footprinting, the search for regions with depletion of cleavage events due to<br> transcription factor binding, is poorly ... View more
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