DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Software OPEN SOURCE
AUDOUX Jérôme; Nicolas, PHILIPPE; CHIKHI Rayan; SALSON Mikael; GALLOPIN Melina; GABRIEL Marc; LE COZ Jeremie; DROUINEAU Emilie; COMMES Therese; Daniel, GAUTHERET;
(2017)
  • Publisher: Figshare
  • Identifiers: doi: 10.5281/zenodo.1065975, doi: 10.5281/zenodo.1065976
  • Subject: Genetics | RNA-seq, differential expression, k-mer, RNA processing | Biochemistry | Plant Biology | Immunology
    • FOR: 80699 Information Systems not elsewhere classified | 69999 Biological Sciences not elsewhere classified

<p>DE-kupl is a computational protocol that aims to capture all k-mer variation in an input set of RNA-seq libraries. This protocol is composed of four main components :</p> <ul> <li>Indexing: index and count all k-mers (k=31) in the input libraries</li> <li... View more
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