lynch_gatk: Version 1.0 of GATK best practices pipeline for detection of variants in Suspected Lynch Syndrome

Software OPEN SOURCE
Bernie Pope;
(2016)
  • Publisher: Figshare
  • Related identifiers: doi: 10.5281/zenodo.59191
  • Subject: zenodo | Uncategorized | Bioinformatics. Variant Calling. GATK Best Practices. Pipeline.

<p>This is an implementation of the GATK Best Practices Pipeline. It is implemented on top of the Ruffus pipeline framework in Python. It has been used for the detection of single nucleotide variants (SNVs) and short insertions and deletions (INDELs) from whole genome s... View more
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