software . 2016

HSA: Version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Zou, Chenchen; Zhang, Yuping; Ouyang, Zhengqing;
Open Source
  • Published: 01 Jan 2016
  • Publisher: Zenodo
Abstract
<p>This upload contains the source code and user manual of HSA, the version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. HSA is a flexible tool that jointly analyzes multiple contact maps of Hi-C data to infer 3D chromatin structure of the genome. More information can be found at: http://ouyanglab.jax.org/hsa/.</p> <p>If you use the software, we would be grateful if you cited the following paper:</p> <p>Zou, C., Zhang, Y., Ouyang, Z. (2016) HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure, Genome Biology, 17:40.</p>
Subjects
free text keywords: multi-track modelling, Hi-C, 3D chromatin structure
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Software . 2016
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software . 2016

HSA: Version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Zou, Chenchen; Zhang, Yuping; Ouyang, Zhengqing;