software . 2016

RClone : Partially Clonal Populations Analysis

Bailleul, Diane; Stoeckel, Solenn; Arnaud-Haond, Sophie;
Open Access English
  • Published: 01 Jan 2016
  • Publisher: HAL CCSD
  • Country: France
Abstract
R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <http://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation app...
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Subjects
free text keywords: development, informatic, [SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT]
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Mémoires en Sciences de l'Information et de la Communication
Software . 2016
Provider: Mémoires en Sciences de l'Information et de la Communication
HAL-Rennes 1
Software . 2016
Provider: HAL-Rennes 1
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Software . 2016
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