MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses (Software Source Code)

Software OPEN SOURCE
Bucci, Vanni; Tzen, Belinda; Li, Ning; Simmons, Matt; Tanoue, Takeshi; Bogart, Elijah; Deng, Luxue; Yeliseyev, Vladimir; Delaney, Mary; Liu, Qing; Olle, Bernat; Stein, Richard; Honda, Kenya; Bry, Lynn; Gerber, Georg;
(2016)
  • Publisher: Figshare
  • Related identifiers: doi: 10.5281/zenodo.50624
  • Subject: Microbiome, Inference, Bayesian, C. difficile, Dynamical Systems | zenodo | Uncategorized

<p>Predicting dynamics of host-microbial ecosystems is crucial for rational design of bacteriotherapies. We present MDSINE, a suite of algorithms for inferring dynamical systems models from microbiome time-series data and predicting temporal behaviors. Using simulated d... View more
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