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Research software . Software . 2016

Sliding window peak calling script

Bischler, Thorsten; Förstner, Konrad U.; Dugar, Gaurav; Sharma, Cynthia M.;
Open Access
Published: 08 Apr 2016
Publisher: Zenodo
Abstract

This script was used in the study "The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni" for identification of CsrA binding sites based on RIP-seq data. The script is written in Python 3 and requires installation of the Python 3 packages numpy and scipy for execution.

Subjects

Peak calling, RIP-seq

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