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NBISweden/AGAT: AGAT-v0.5.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 22 Sep 2020Publisher:Zenodo

Authors: Jacques Dainat; Darío Hereñú; PascalP;

doi: 10.5281/zenodo.4685910 , 10.5281/zenodo.5036996 , 10.5281/zenodo.4205393 , 10.5281/zenodo.5336786 , 10.5281/zenodo.4637977 , 10.5281/zenodo.4732260 , 10.5281/zenodo.4044553

NBISweden/AGAT: AGAT-v0.5.0

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Abstract

fix #110 intron missing 1bp in calculation for agat_sp_statistics.pl fix #111 import missing for plot is statistics.pm (agat_sp_statistics.pl -p) improvement of extract_sequeces.pl: --cdna gives now real cdna. Add --mrna option to get biological mRNA. Remove DONOTREVCOMP option (that was acting only on minus strand feature). Add revcomp parameter that acts on all features (minus or plus strand). Now only spreads feature are merged together (before it was all L3 features). Add --merge to be able to merge features not spread (e.g. exon). Add option plus_strand_only to get sequence only from plus strand (minus strand feature are revcomp). Update help.

Related Organizations

Science for Life Laboratory
Sweden

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NBISweden/AGAT: AGAT-v0.5.0

NBISweden/AGAT: AGAT-v0.5.0

1 Research products, page 1 of 1

NBISweden/AGAT: AGAT-v1.4.1