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Software . 2021
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Software . 2020
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Software . 2021
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Software . 2021
Data sources: ZENODO
ZENODO
Software . 2021
Data sources: ZENODO
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NBISweden/AGAT: AGAT-v0.5.0

Authors: Jacques Dainat; Darío Hereñú; PascalP;

NBISweden/AGAT: AGAT-v0.5.0

Abstract

fix #110 intron missing 1bp in calculation for agat_sp_statistics.pl fix #111 import missing for plot is statistics.pm (agat_sp_statistics.pl -p) improvement of extract_sequeces.pl: --cdna gives now real cdna. Add --mrna option to get biological mRNA. Remove DONOTREVCOMP option (that was acting only on minus strand feature). Add revcomp parameter that acts on all features (minus or plus strand). Now only spreads feature are merged together (before it was all L3 features). Add --merge to be able to merge features not spread (e.g. exon). Add option plus_strand_only to get sequence only from plus strand (minus strand feature are revcomp). Update help.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
16
Top 10%
Average
Top 10%