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ZENODO
Software . 2020
Data sources: Datacite
ZENODO
Software . 2020
Data sources: ZENODO
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Funannotate v1.8.1: Eukaryotic genome annotation

Authors: Jonathan M. Palmer; Jason Stajich;

Funannotate v1.8.1: Eukaryotic genome annotation

Abstract

highly recommend all users upgrade Code now python 2/3 compatible (only 9 months late....) EVM now uses interlap for slicing input files, significant speed increase for larger genomes if --organism other is passed, codingquarry is now disabled by default -- you can turn it on by specifying a valid weight, ie --weights codingquarry:2 support for signalp version 5 move resources to JSON download via GitHub, will allow for updating/changing resources without re-installing a new version of funannotate several fixes for more robust GFF3 parsing fix for cazyme assignments where results were duplicated; also upgraded to database version 8 fix bug where PASA results not properly passed to EVM if funannotate predict was re-run many other bug fixes

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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    80
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
80
Top 1%
Top 10%
Top 1%