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cdmuir/photosynthesis: v2.1.1

Authors: Chris Muir; Joseph Ronald Stinziano;

cdmuir/photosynthesis: v2.1.1

Abstract

Added Bayesian options to fit light-response and light respiration models via fit_photosynthesis(..., .method = "brms") Preferred method for fitting data to models is fit_photosynthesis() which performs all checks and manipulations prior to passing arguments to various fit_ functions. Deprecated fit_r_light_kok(), fit_r_light_WalkerOrt(), fit_r_light_yin() in favor of fit_r_light2(). The new function uses non-standard evaluation to replace variable names as in dplyr::rename(). It will also extend functionality to enable Bayesian fitting using brms and does not output a plot. Added Bayesian fitting method to fit_aq_response2() using brms package. Deprecated fit_aq_response() in favor of fit_aq_response2(). The new function uses non-standard evaluation to replace variable names as in dplyr::rename(). It will also extend functionality to enable Bayesian fitting using brms and does not output a plot. Fixed bug with setting upper bound for search in find_A() Addressed warnings about deprecated arguments in tidyselect and ggplot2 Added C_i (intercellular CO2 concentration) to output from photo() and photosynthesis()

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