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A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity

Authors: Christopher P Cook; Mark Taylor; Yale Liu; Ralf Schmidt; Andrew Sedgewick; Esther Kim; Ashley Hailer; +13 Authors

A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity

Abstract

In our manuscript, we utilized scRNA-seq libraries we generated from: -8 human psoriatic skin samples and 7 healthy control skin samples (ZIST.rds) -3 human psoriatic skin samples before and after tildrakizumab treatment (three_tildra_Trm1.rds) These *rds files are the Seurat objects for these data sets post-filtering and integration. For raw sequencing data corresponding to these samples, access can be found under accession number EGA: S00001005271. We also utilized bulk RNAseq data generated from CRISPR-Cas9 knockout of ZFP36L2 in human CD4 T cells from 3 different donors. The count matrices for each of these individual samples is uploaded here alongside a key explaining what each of the samples are with filenames that also correspond to the raw fastq files submitted at the European Genome-Phenome Archive (EGA), under accession number EGA: S00001005271. There are two replicates for each sample. All methods underlying the generation and analysis of these datasets can be found in the original manuscript: Cook CP, Taylor M, Liu Y, et al. A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity. Cell Rep Med. 2022;3(8):100715. doi:10.1016/j.xcrm.2022.100715 Any additional questions or information requests can be addressed to Jeffrey.cheng@ucsf.edu or cook.675@berkeley.edu

Keywords

ZFP36; ZFP36L2; cytokine; inflammation; psoriasis; resident-memory T cell; tristetraprolin scRNA-seq

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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