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This coordinate and trajectory dataset is that of cellulase and octaose substrate in water. It has been derived from the 7CEL PDB structure of a fungal cellobiohydrolase. The original enzyme has been modified to revert the mutation at position 217 and to include disulfide bonds. The octaose substrate is an oligosaccharide consisting of 8 beta 1-4 linked glucose monomers. The enzyme and substrate have been placed in a cubic TIP3P water box containing 0.15 M ions (NaCl). The files includes are: cbh1test.pdb: the coordinates of the entire system (water, protein and substrate) in PDB format. cbh1test.dcd: a short MD trajectory (16 frames) in CHARMM DCD format.
cellulase
cellulase
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