nipy/nipype: 1.11.0

Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Goncalves, Mathias; Jarecka, Dorota; Ziegler, Erik; Berleant, Shoshana; Ellis, David Gage; Pinsard, Basile; Madison, Cindee; Waskom, Michael; Notter, Michael Philipp; Clark, Daniel; Manhães-Savio, Alexandre; Halchenko, Yaroslav O.; Clark, Dav; Jordan, Kesshi; Dayan, Michael; Norgaard, Martin; Loney, Fred; Papadopoulos Orfanos, Dimitri; Salo, Taylor; Johnson, Hans; Dewey, Blake E; Bougacha, Salma; Keshavan, Anisha; Yvernault, Benjamin; Christian, Horea; Hamalainen, Carlo; Ćirić, Rastko; Dubois, Mathieu; Joseph, Michael; Cipollini, Ben; Tilley II, Steven; Visconti di Oleggio Castello, Matteo; De La Vega, Alejandro; Wong, Jason; Kaczmarzyk, Jakub; Huntenburg, Julia M.; Clark, Michael G.; Kent, James D.; Benderoff, Erin; Erickson, Drew; Dias, Maria de Fatima; Moloney, Brendan; Genovese, Maurilio; Hanke, Michael; Giavasis, Steven; Nichols, B. Nolan; Tungaraza, Rosalia; Dell'Orco, Andrea; Frohlich, Caroline; Wassermann, Demian; de Hollander, Gilles; Kepler, Gal; Koudoro, Serge; Eshaghi, Arman; Millman, Jarrod; Mancini, Matteo; Close, Thomas; Nielson, Dylan M.; Varoquaux, Gael; Waller, Lea; Watanabe, Aimi; Mordom, David; Cluce, Jon; Guillon, Jérémy; Robert-Fitzgerald, Timothy; Chetverikov, Andrey; Rokem, Ariel; Acland, Benjamin; Bernardoni, Fabio; Forbes, Jessica; Markello, Ross; Gillman, Ashley; Kong, Xiang-Zhen; Geisler, Daniel; Salvatore, John; Espana, Lezlie; Gramfort, Alexandre; Doll, Anna; Buchanan, Colin; DuPre, Elizabeth; Liu, Siqi; Schaefer, Alexander; Kleesiek, Jens; Butry, Lionel; Sikka, Sharad; Schwartz, Yannick; Ghayoor, Ali; Vaillant, Ghislain; Lee, John A.; Mattfeld, Aaron; Richie-Halford, Adam; Liem, Franz; Perez-Guevara, Martin Felipe; Heinsfeld, Anibal Sólon; Haselgrove, Christian; Durnez, Joke; Lampe, Leonie; Poldrack, Russell; Glatard, Tristan; Baratz, Zvi; Tabas, Alejandro; Cumba, Chad; Pérez-García, Fernando; Blair, Ross; Iqbal, Shariq; Welch, David; Condamine, Eric; Contier, Oliver; Triplett, William; Craddock, R. Cameron; Correa, Carlos; Stadler, Jörg; Warner, Joshua; Sisk, Lucinda M.; Falkiewicz, Marcel; Sharp, Paul; Rothmei, Simon; Kim, Sin; Weinstein, Alejandro; Kahn, Ari E.; Kastman, Erik; Bottenhorn, Katherine; Grignard, Martin; Perkins, L. Nathan; Anijärv, Toomas Erik; Zhou, Dale; Bielievtsov, Dmytro; Cooper, Gavin; Stojic, Hrvoje; Hui Qian, Tan; Linkersdörfer, Janosch; Renfro, Mandy; Hinds, Oliver; Stanley, Olivia; Velasco, Pablo; Küttner, René; Pauli, Wolfgang M.; Wu, Jianxiao; Xie, Xihe; Glen, Daniel; Kimbler, Adam; Meyers, Benjamin; Tarbert, Claire; Ginsburg, Daniel; Haehn, Daniel; Margulies, Daniel S.; Ma, Feilong; Malone, Ian B.; Snoek, Lukas; Brett, Matthew; Cieslak, Matthew; Hallquist, Michael; Molina-Romero, Miguel; Bilgel, Murat; Lee, Nat; Kuntke, Paul; Jalan, Raunak; Inati, Souheil; Gerhard, Stephan; Mathotaarachchi, Sulantha; Saase, Victor; Van, Andrew; Petre, Bogdan; Steele, Christopher John; Ort, Eduard; Lerma-Usabiaga, Garikoitz; Schwabacher, Isaac; Arias, Jaime; Lai, Jeff; Pellman, John; Huguet, Jordi; Junhao WEN; Leinweber, Katrin; Chawla, Kshitij; Weninger, Leon; Modat, Marc; Bannert, Michael M.; Mukhometzianov, Rinat; Harms, Robbert; Andberg, Sami Kristian; Matsubara, K; González Orozco, Abel A.; Routier, Alexandre; Marina, Ana; Davison, Andrew; Floren, Andrew; Park, Anne; Frederick, Blaise; Cheung, Brian; McDermottroe, Conor; McNamee, Daniel; Shachnev, Dmitry; Vogel, Dorian; Flandin, Guillaume; Jones, Henry; Gonzalez, Ivan; Varada, Jan; Schlamp, Kai; Podranski, Kornelius; Huang, Lijie; Noel, Maxime; Pannetier, Nicolas; Numssen, Ole; Khanuja, Ranjeet; Urchs, Sebastian; Shim, Sunjae; Nickson, Thomas; Broderick, William; Tambini, Arielle; Mihai, Paul Glad; Gorgolewski, Krzysztof J.; Ghosh, Satrajit

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Software

Data sources: ZENODO

nipy/nipype: 1.11.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software Under curationPublisher:Zenodo

Authors: Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Goncalves, Mathias; Jarecka, Dorota; Ziegler, Erik; Berleant, Shoshana; +209 Authors

Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Goncalves, Mathias; Jarecka, Dorota; Ziegler, Erik; Berleant, Shoshana; Ellis, David Gage; Pinsard, Basile; Madison, Cindee; Waskom, Michael; Notter, Michael Philipp; Clark, Daniel; Manhães-Savio, Alexandre; Halchenko, Yaroslav O.; Clark, Dav; Jordan, Kesshi; Dayan, Michael; Norgaard, Martin; Loney, Fred; Papadopoulos Orfanos, Dimitri; Salo, Taylor; Johnson, Hans; Dewey, Blake E; Bougacha, Salma; Keshavan, Anisha; Yvernault, Benjamin; Christian, Horea; Hamalainen, Carlo; Ćirić, Rastko; Dubois, Mathieu; Joseph, Michael; Cipollini, Ben; Tilley II, Steven; Visconti di Oleggio Castello, Matteo; De La Vega, Alejandro; Wong, Jason; Kaczmarzyk, Jakub; Huntenburg, Julia M.; Clark, Michael G.; Kent, James D.; Benderoff, Erin; Erickson, Drew; Dias, Maria de Fatima; Moloney, Brendan; Genovese, Maurilio; Hanke, Michael; Giavasis, Steven; Nichols, B. Nolan; Tungaraza, Rosalia; Dell'Orco, Andrea; Frohlich, Caroline; Wassermann, Demian; de Hollander, Gilles; Kepler, Gal; Koudoro, Serge; Eshaghi, Arman; Millman, Jarrod; Mancini, Matteo; Close, Thomas; Nielson, Dylan M.; Varoquaux, Gael; Waller, Lea; Watanabe, Aimi; Mordom, David; Cluce, Jon; Guillon, Jérémy; Robert-Fitzgerald, Timothy; Chetverikov, Andrey; Rokem, Ariel; Acland, Benjamin; Bernardoni, Fabio; Forbes, Jessica; Markello, Ross; Gillman, Ashley; Kong, Xiang-Zhen; Geisler, Daniel; Salvatore, John; Espana, Lezlie; Gramfort, Alexandre; Doll, Anna; Buchanan, Colin; DuPre, Elizabeth; Liu, Siqi; Schaefer, Alexander; Kleesiek, Jens; Butry, Lionel; Sikka, Sharad; Schwartz, Yannick; Ghayoor, Ali; Vaillant, Ghislain; Lee, John A.; Mattfeld, Aaron; Richie-Halford, Adam; Liem, Franz; Perez-Guevara, Martin Felipe; Heinsfeld, Anibal Sólon; Haselgrove, Christian; Durnez, Joke; Lampe, Leonie; Poldrack, Russell; Glatard, Tristan; Baratz, Zvi; Tabas, Alejandro; Cumba, Chad; Pérez-García, Fernando; Blair, Ross; Iqbal, Shariq; Welch, David; Condamine, Eric; Contier, Oliver; Triplett, William; Craddock, R. Cameron; Correa, Carlos; Stadler, Jörg; Warner, Joshua; Sisk, Lucinda M.; Falkiewicz, Marcel; Sharp, Paul; Rothmei, Simon; Kim, Sin; Weinstein, Alejandro; Kahn, Ari E.; Kastman, Erik; Bottenhorn, Katherine; Grignard, Martin; Perkins, L. Nathan; Anijärv, Toomas Erik; Zhou, Dale; Bielievtsov, Dmytro; Cooper, Gavin; Stojic, Hrvoje; Hui Qian, Tan; Linkersdörfer, Janosch; Renfro, Mandy; Hinds, Oliver; Stanley, Olivia; Velasco, Pablo; Küttner, René; Pauli, Wolfgang M.; Wu, Jianxiao; Xie, Xihe; Glen, Daniel; Kimbler, Adam; Meyers, Benjamin; Tarbert, Claire; Ginsburg, Daniel; Haehn, Daniel; Margulies, Daniel S.; Ma, Feilong; Malone, Ian B.; Snoek, Lukas; Brett, Matthew; Cieslak, Matthew; Hallquist, Michael; Molina-Romero, Miguel; Bilgel, Murat; Lee, Nat; Kuntke, Paul; Jalan, Raunak; Inati, Souheil; Gerhard, Stephan; Mathotaarachchi, Sulantha; Saase, Victor; Van, Andrew; Petre, Bogdan; Steele, Christopher John; Ort, Eduard; Lerma-Usabiaga, Garikoitz; Schwabacher, Isaac; Arias, Jaime; Lai, Jeff; Pellman, John; Huguet, Jordi; Junhao WEN; Leinweber, Katrin; Chawla, Kshitij; Weninger, Leon; Modat, Marc; Bannert, Michael M.; Mukhometzianov, Rinat; Harms, Robbert; Andberg, Sami Kristian; Matsubara, K; González Orozco, Abel A.; Routier, Alexandre; Marina, Ana; Davison, Andrew; Floren, Andrew; Park, Anne; Frederick, Blaise; Cheung, Brian; McDermottroe, Conor; McNamee, Daniel; Shachnev, Dmitry; Vogel, Dorian; Flandin, Guillaume; Jones, Henry; Gonzalez, Ivan; Varada, Jan; Schlamp, Kai; Podranski, Kornelius; Huang, Lijie; Noel, Maxime; Pannetier, Nicolas; Numssen, Ole; Khanuja, Ranjeet; Urchs, Sebastian; Shim, Sunjae; Nickson, Thomas; Huang, Lijie; Broderick, William; Tambini, Arielle; Mihai, Paul Glad; Gorgolewski, Krzysztof J.; Ghosh, Satrajit;

doi: 10.5281/zenodo.18841577

nipy/nipype: 1.11.0

- Summary

Abstract

This release modernizes Nipype's legacy packaging. Key changes include better error propagation when utilizing run_without_submitting, proper quoting of paths with spaces, a fix for SPM v25 outputs, enhancements to dcm2niix, support for dynamic RAM estimation, and a revamped CI process for pre‑release tests. FIX: Propagate errors encountered when using run_without_submitting (https://github.com/nipy/nipype/pull/3745) FIX: Properly quote file paths with spaces (https://github.com/nipy/nipype/pull/3739) FIX: Catch OSError from getpass.getuser (https://github.com/nipy/nipype/pull/3728) FIX: SPM output type for version 25 (https://github.com/nipy/nipype/pull/3734) ENH: Add -w flag to dcm2niix interface (https://github.com/nipy/nipype/pull/3723) ENH: Dynamic RAM estimator (https://github.com/nipy/nipype/pull/3740) MAINT: Modernize packaging (https://github.com/nipy/nipype/pull/3742) CI: Split pre-release tests into cron job, open issues on failure (https://github.com/nipy/nipype/pull/3746)

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