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Conference object . 2025
License: CC BY
Data sources: Datacite
ZENODO
Conference object . 2025
License: CC BY
Data sources: Datacite
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Phylogenomic insights into NLR diversity and evolution in Caryophyllales

Authors: LAKSANAVILAT, Nutthalak;

Phylogenomic insights into NLR diversity and evolution in Caryophyllales

Abstract

The order Caryophyllales encompasses a wide diversity of plant species, including crops and stress-adapted xerophytes, yet the composition of their immune receptor repertoire remains largely unexplored. To investigate resistance gene diversity in this lineage, we performed a phylogenomic analysis of 5,277 nucleotide-binding leucine-rich repeat (NLR) immune proteins across 29 Caryophyllales species. Our findings reveal substantial variation in NLR abundance and composition compared to well-studied plant orders like Solanales and Asterales, with an average of 181 NLRs per species. Notably, CC-NLRs (coiled-coil domain) and CCG10-NLRs dominate this lineage, whereas TIR-NLRs and CCR-NLRs are less expanded, with fewer than two copies per species on average. The TIR-NLR repertoire of Caryophyllales only includes the conserved TNL1 clade, which is also present in other plant phyla such as superasterids, superrosids, and magnolids. Furthermore, we found that NRG1, a well-known CCR-NLR involved in immune signaling, is absent across all analysed Caryophyllales species, while ADR1 remains present, suggesting a lineage-specific loss of NRG1. This comprehensive analysis of the Caryophyllales NLR repertoire provides a valuable resource for comparative genomics and resistance breeding in crops and wild species.

Keywords

NLR diversity, evolution, phylogenomics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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