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ModularImageAnalysis (MIA)

Authors: Cross, Stephen John;
Abstract

New plugin features Overlays generated by MIA modules can be toggled on/off with F12 keyboard shortcut. New modules UnwarpCentroids module uses sets of tracked object centroid coordinates to apply B-spline unwarping. New module features Updated ApplyCellpose to work with the most recent version of PTBIOP wrapper. This also allows the latest Cellpose models (e.g. cpsam) to be used. PTBIOP can be installed directly from the ImageJ Updater again. ROIs can be selected in ManuallyIdentifyObjects by double-clicking on image ApplySegmentAnything now also accepts ROIs (not just point centroids) as inputs. When a ROI is provided, the full region is sent to Segment Anything. FocusStackLocal now ensures applied height map is within range of input stack. Other Exported Excel files now record memory status of computer to help identify problems. Fixed environment installation in SAMJ modules. Updated variable names in Elastix modules to match latest versions of PTBIOP. General bugfixes.

Keywords

BioImageAnalysis, ImageAnalysis, Fiji, ImageJ

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average