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SCimilarity is a unifying representation of single-cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training. This enables a novel cell search capability, which sifts through millions of profiles to find cells similar to a query cell state and allows researchers to quickly and systematically leverage massive public scRNA-seq atlases to learn about a cell state of interest. This repository contains public datasets for SCimilarity tutorials, specifically: A subsample of single-cell data from Adams, et al. Science Advances, 2020 (GSE136831) as an AnnData object in h5ad format. Terms of GSE136831: Used with permission. Research developed by TLC4PF and the Yale School of Medicine led by Dr. Naftali Kaminski. © 2023 Pulmonary Fibrosis Cell Atlas website and associated content. All rights reserved. Please see the project website for more information: www.IPFCellAtlas.com In addition, please cite (https://www.science.org/doi/10.1126/sciadv.aba1983 and for a description of the website creation methodology please cite (https://doi.org/10.1152/ajplung.00451.2020).
SCimilarity, single-cell RNA-seq, deep learning, cell type annotation, cell search, cell type classification, cell query
SCimilarity, single-cell RNA-seq, deep learning, cell type annotation, cell search, cell type classification, cell query
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 0 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
| views | 57 | |
| downloads | 43 |

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