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Omega — harnessing the power of large language models for bioimage analysis

Authors: Royer, Loic A.;

Omega — harnessing the power of large language models for bioimage analysis

Abstract

In this study, we present Omega, an advanced conversational agent based on Large Language Models (LLMs) such as OpenAI's ChatGPT, capable of conducting image processing and analysis tasks through a human- friendly natural language interface. The system leverages the LangChain Python library and is integrated as a plugin to napari, allowing users to instruct complex tasks without requiring prior programming knowledge. Omega can also generate instructional strategies, make interface widgets upon request, and rectify its own coding mistakes. Its abilities extend to executing Python code, controlling the napari viewer, querying documentation, and utilizing hardware acceleration libraries. The presented approach, while in its early stages, hints at a future where language-based agents could revolutionize how we interact with and use complex computational systems, making them more accessible to a broader audience.

Keywords

LLM, Microscopy, ChatGPT, AI, Image Processing, Conversational Agent, Image Processing, Computer-Assisted, Humans, Bioimage Analysis, Image Analysis, Software

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
15
Top 10%
Top 10%
Top 10%
797
616
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