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Software . 2023
License: CC BY
Data sources: Datacite
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Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Authors: Unni, Deepak R.; Moxon, Sierra A. T.; Bada, Michael; Brush, Matthew; Bruskiewich, Richard; Caufield, J. Harry; Clemons, Paul A.; +189 Authors

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Abstract

What's Changed adding aspect qualifier enums by @EvanDietzMorris in https://github.com/biolink/biolink-model/pull/1380 update name for gtrx infores source to match BTE's name. by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1384 reorder id_prefixes for small molecule, fixes #1375 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1376 Update infores_catalog.yaml by @beasleyjonm in https://github.com/biolink/biolink-model/pull/1389 PFCOR->PFOCR by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1385 Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in https://github.com/biolink/biolink-model/pull/1382 Created new class GeneAffectsChemicalAssociation with qualifiers by @RichardBruskiewich in https://github.com/biolink/biolink-model/pull/1388 Cx infores edits by @colleenXu in https://github.com/biolink/biolink-model/pull/1391 Update understanding-the-model.md by @pabloDumas in https://github.com/biolink/biolink-model/pull/1394 Fix answer appraiser infores by @maximusunc in https://github.com/biolink/biolink-model/pull/1396 Update biolink-model.yaml by @mbrush in https://github.com/biolink/biolink-model/pull/1395 Chemical prefixes - propagate id_prefixes down the chemical entity hierarchy by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1398 Bump urllib3 from 2.0.2 to 2.0.6 by @dependabot in https://github.com/biolink/biolink-model/pull/1397 Fix foodb prefixes by @cbizon in https://github.com/biolink/biolink-model/pull/1399 Update xref URL for infores:arax in infores_catalog.yaml by @saramsey in https://github.com/biolink/biolink-model/pull/1403 add pydantic-v2 model by @glass-ships in https://github.com/biolink/biolink-model/pull/1404 Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in https://github.com/biolink/biolink-model/pull/1400 add semantic map to STY:T167, fixes #1370 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1406 Add qualifier to Association by @kevinschaper in https://github.com/biolink/biolink-model/pull/1407 Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in https://github.com/biolink/biolink-model/pull/1409 Adds deprecated as a node property slot added to biolink:Entity by @kevinschaper in https://github.com/biolink/biolink-model/pull/1421 Update infores_catalog.yaml by @karafecho in https://github.com/biolink/biolink-model/pull/1422 Update infores_catalog.yaml by @karafecho in https://github.com/biolink/biolink-model/pull/1423 bump release to pre-doc change, 3.6.0 release, regenerate pydantic models by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1427 New Contributors @pabloDumas made their first contribution in https://github.com/biolink/biolink-model/pull/1394 @maximusunc made their first contribution in https://github.com/biolink/biolink-model/pull/1396 @saramsey made their first contribution in https://github.com/biolink/biolink-model/pull/1403 @glass-ships made their first contribution in https://github.com/biolink/biolink-model/pull/1404 Full Changelog: https://github.com/biolink/biolink-model/compare/v3.5.4...v3.6.0

Please cite the following works when using this software.

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average