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http://dx.doi.org/10.1073/pnas...
Article . 2012 . Peer-reviewed
Data sources: SNSF P3 Database
Proceedings of the National Academy of Sciences
Article . 2012 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.5167/uzh...
Other literature type . 2012
Data sources: Datacite
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Massively parallel measurements of molecular interaction kinetics on a microfluidic platform

Authors: Geertz Marcel; Shore David; Maerkl Sebastian J.;

Massively parallel measurements of molecular interaction kinetics on a microfluidic platform

Abstract

Quantitative biology requires quantitative data. No high-throughput technologies exist capable of obtaining several hundred independent kinetic binding measurements in a single experiment. We present an integrated microfluidic device (k-MITOMI) for the simultaneous kinetic characterization of 768 biomolecular interactions. We applied k-MITOMI to the kinetic analysis of transcription factor (TF)—DNA interactions, measuring the detailed kinetic landscapes of the mouse TF Zif268, and the yeast TFs Tye7p, Yox1p, and Tbf1p. We demonstrated the integrated nature of k-MITOMI by expressing, purifying, and characterizing 27 additional yeast transcription factors in parallel on a single device. Overall, we obtained 2,388 association and dissociation curves of 223 unique molecular interactions with equilibrium dissociation constants ranging from 2 × 10 -6 M to 2 × 10 -9 M, and dissociation rate constants of approximately 6 s -1 to 8.5 × 10 -3 s -1 . Association rate constants were uniform across 3 TF families, ranging from 3.7 × 10 6 M -1 s -1 to 9.6 × 10 7 M -1 s -1 , and are well below the diffusion limit. We expect that k-MITOMI will contribute to our quantitative understanding of biological systems and accelerate the development and characterization of engineered systems.

Keywords

Saccharomyces cerevisiae Proteins, SX20 Research, Technology and Development Projects, Microfluidics, Molecular Sequence Data, Cell Cycle Proteins, Saccharomyces cerevisiae, Mice, SX00 SystemsX.ch, Animals, SX05 DynamiX, Early Growth Response Protein 1, Homeodomain Proteins, 1000 Multidisciplinary, Base Sequence, Reproducibility of Results, DNA, DNA-Binding Proteins, Repressor Proteins, Kinetics, 570 Life sciences; biology, Algorithms, Protein Binding, Transcription Factors

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
106
Top 10%
Top 10%
Top 10%
Green
bronze